Pochonia chlamydosporia: VFPPC_03489
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Entry
VFPPC_03489 CDS
T09407
Name
(RefSeq) RNA polymerase II transcription factor related protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03022
Basal transcription factors
pchm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VFPPC_03489
09124 Replication and repair
03420 Nucleotide excision repair
VFPPC_03489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_03489
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_03489
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VFPPC_03489
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VFPPC_03489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Ubiquitin_6
Motif
Other DBs
NCBI-GeneID:
28846978
NCBI-ProteinID:
XP_018147679
UniProt:
A0A179FZV2
LinkDB
All DBs
Position
2:complement(4717676..4719677)
Genome browser
AA seq
646 aa
AA seq
DB search
MATPAGRTLFKKKDGILTLTADHQTVTWTPNSGGPPTISLPVSSITNLQQTPETAAKVML
KIFEKADNGADPATYLFHFNTSEAKSEAKAVKDVLSKILADMRSNDAGVPRPSVGTTTSG
SISTPAGVGSGSAAMAFASAVNSQPPSSTRWFDETQLKNDIELQQSLMKKDKSLHQTYME
AITTKPESISGAAFNSQFWSTRTNLLRAHAIEINQKKGAYNVLSTVKPRTVDGELKLNIS
VEQVQMIFAQHPLVKRIYNENVPKLSEADFWSRFFLSRLSKKLRGERVTENDAQDPLFDK
YDASENTQGVQSKIMSQSVPHIIDLEGNEENQGGFKGGNAKDVEMRPRSNIPIVKTLNSL
SEKIMANVAPSDVYDNDAHAERDAFSELALRDLRGDNAERRIMLNVKEQNKFFSKQDASP
SENARIFATQRPQEVLSKIRSALRQFEEDSSDGASLQAAIAFEDESDSDDEDKKHVQVGS
RAAIKAAEMEVMDGVLQQRAQKYGHSTDATSPMGLPSSITEKCSLTHATSIEFLHQFWTA
FLSGDPDRAAELQYLAESLKRSVARITAVAEDADKERESIIRKRKQEIRDHFERTGKKIR
WKSDMVGGGRDAVLKLMQPVLHALDKAQADYSRALAAEGIQISTEG
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggccaccccagctggtcgcacgctgttcaaaaagaaagatggcattctcaccttgact
gctgatcatcaaaccgtcacatggacaccgaatagtggtggcccgccaacaatttctttg
ccagtctccagcattactaatcttcagcagacccctgaaaccgctgccaaggtcatgctg
aaaatatttgagaaggcagacaatggagccgaccccgcgacatatctctttcatttcaat
acttccgaagctaagtcggaagctaaggctgtcaaagatgtcctgtccaaaattttggcg
gatatgaggagtaacgatgctggcgtccctcgaccaagtgttggaacaaccaccagcggg
agcatctctactcctgctggtgtaggtagtggatctgcagccatggcatttgccagcgcg
gtgaactcgcaacccccgtcatcaactcggtggtttgatgagacgcagttaaagaatgat
atagagctccaacagtccctgatgaaaaaggacaagagtctccaccaaacatatatggaa
gccataacgacaaaacctgaatcaatatctggcgccgctttcaactcacagttttggtct
acacgcacgaacttgctcagagctcacgccatcgaaattaatcagaagaagggcgcctac
aacgtcctctcaacggtcaaaccgcgcacagttgatggagaattgaaactgaatatcagc
gtcgagcaagttcaaatgatttttgcccagcatccactggtgaaacgaatatacaacgag
aatgtaccgaagctttccgaggcagatttttggtctcgattcttcctaagtcgtctgtca
aagaagcttcggggagagcgagtaacggaaaacgacgcccaggatcctctttttgacaaa
tatgatgcctccgagaatacacaaggcgttcaaagcaagatcatgtcgcagagtgttcct
cacatcatcgatttagagggtaatgaagaaaaccagggaggcttcaaaggtggtaatgct
aaggatgtagaaatgcggcctaggtcaaatatacctatcgtgaagacattgaacagtctg
agcgagaagattatggccaatgtcgcaccctcggatgtgtatgacaatgatgcccatgcg
gaacgggacgcattcagcgaacttgctctgagggatttgcgtggtgacaacgccgagcga
cgcatcatgctcaatgtgaaagagcagaacaaatttttttcaaagcaagacgcatctcca
tcagaaaatgcccgcatttttgcgacgcaacggccacaagaagttttatccaagattcgg
agtgccctgagacagttcgaagaagactctagtgatggcgctagcttgcaagccgccatc
gcttttgaggacgaaagcgatagcgatgatgaggataagaagcacgttcaagtgggatct
cgtgccgcgatcaaagccgccgaaatggaggtcatggatggagttcttcagcagcgagca
caaaagtatggtcacagcacggatgcaacatctccaatgggactaccatcttccatcaca
gagaaatgctcgctcactcacgcgacaagtattgaatttcttcatcagttctggactgcg
tttctctctggtgatcctgaccgtgctgccgaacttcaatatctagccgagtctctcaaa
cgatcagttgcccgcattaccgcggttgccgaagacgccgataaagagcgagagagtatc
attcgtaaacgcaaacaggaaattcgcgaccatttcgagcgtacgggcaaaaaaatcaga
tggaaatcagatatggttggaggtggacgagacgccgtcctcaaactgatgcaaccggtg
ctccacgctctggacaaagcacaagctgattactccagagcgctggcagccgagggaata
caaatatcaaccgagggttaa
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