Pochonia chlamydosporia: VFPPC_04534
Help
Entry
VFPPC_04534 CDS
T09407
Name
(RefSeq) DNA polymerase beta
KO
K10981
DNA polymerase IV [EC:
2.7.7.7
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VFPPC_04534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_04534
Enzymes [BR:
pchm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VFPPC_04534
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
VFPPC_04534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_lambd_f
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
BRCT_2
NTP_transf_2
HHH_5
Motif
Other DBs
NCBI-GeneID:
28847872
NCBI-ProteinID:
XP_018145140
UniProt:
A0A179FSW3
LinkDB
All DBs
Position
3:<2209268..>2211243
Genome browser
AA seq
604 aa
AA seq
DB search
MAKSLPFPRIYLLPTHLEPQELHYFEDAVSSLTYDIHEAELIVGKISRPARAEFELRRRK
LNVRLRPERDGQSTTASISPGPVGALQEYPGPKRRKIVDAQHSKYQAVENKRIQVLKLSW
LIDCLAQRKILPVDNYLLLEGYKITPLIPNVALNEGHDPSYAGKILERATMDTAPNTSTQ
AALSPSRFKVDPIVHSQGTPPPLVRETTSEHEVKMPGIPDFLHTTYSCQRPTPLNSPNDD
FILELKKIRTLRILQGDQIGVRAYSTSIATIAAYPHLIKSYHEVEQLPGCSTKIAELYQA
WLRDGQTRETAAAESDARMSTLRLFYDIWGVGDTTAREFYKKGWRGLDDLVEYGWRSLTR
VQQIGVKFYEEFAQKISRPEVEGIANLILEHARGIEPGFEMVIVGGYRRGKKESGDVDII
LSHREESKTMHMIEKIVVSLERFNLVTHTLSMWTKNSERGQLPLAWQGDGAGRGSGFDTL
DKAMIVWQNKQHLGQKAPHRRVDIIISPWKTVGCALLGWSGGTTFQRDLRRYCKQEKQLK
FDSSGIRSRTDGTWVDFESRLVPPVGETSPVQAFQLAPSMEVAEKRVFEGLGLTWRDPTE
RCTG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcattaccatttccacgcatatatctgttaccaactcacctggagccacag
gagctccactatttcgaggacgccgtgtcgtctctcacatacgacattcatgaagccgag
cttatagtaggcaaaatatcaagaccggcgcgagcggaattcgaattgaggcggcgtaaa
ctgaatgttaggttacgcccagagcgtgatggtcagagtacaacagcatcgatatcgcct
ggccctgtgggggcgttgcaagagtatccgggtccaaagcgtcgcaaaatagtcgatgcc
cagcattcaaaatatcaagctgtggagaataaaagaatccaagttcttaaactatcatgg
ctaatagactgtcttgctcaaaggaagattcttccagttgacaactacctcctgcttgag
ggctacaagattacgccactgatccccaacgtggcactgaatgagggtcacgatccctca
tacgcaggcaaaatcctagagcgtgcgactatggacaccgccccaaacacttcaactcag
gctgcactatcgccttcgcggtttaaagtcgatccaatagtccacagtcagggcacaccg
ccgccactggtgcgagagacgacctctgaacatgaggtcaaaatgcctggtatccctgac
ttcctccacacaacatactcatgccagcgaccaacacctctgaactccccaaatgacgac
ttcattctagaattgaaaaaaatccgaaccttgcgaattctccaaggagaccagattggt
gtacgggcatactcaacgtccattgccacaatagcggcatatccgcatctcatcaaaagt
tatcatgaggttgaacaactcccaggctgcagcactaagattgctgagttgtaccaagca
tggctgagggatggccagaccagagagacagccgctgcagaatcagatgccaggatgtcc
acactgaggcttttttacgatatatggggggtaggcgataccactgctagggaattttac
aagaaaggatggcgtggccttgacgatctcgtggagtacggttggagatcccttacccga
gtccagcaaataggtgtaaagttttacgaggaatttgcacaaaaaatatcccgtccagaa
gtagaaggaatcgcaaacctaatactcgaacatgcgcggggaatcgagcctggatttgaa
atggtgatagtggggggttaccggcgaggcaagaaggaaagcggcgacgtggacatcatc
ttgagccatcgcgaagaatcgaagaccatgcatatgattgaaaagatcgtggtcagcctt
gaacgattcaaccttgtgactcatactctcagtatgtggactaaaaacagcgaacgaggc
cagctaccgctggcatggcaaggggatggagctgggcgtggatcggggtttgacacgctt
gacaaggccatgattgtgtggcagaacaagcaacacttgggtcagaaagcgccgcatcga
agagtggatatcattatcagcccttggaaaacagttgggtgtgcactgctagggtggagc
ggtggtacgacgtttcaaagagatcttcgacgatactgtaaacaggaaaagcaactcaag
tttgacagcagcggcattcgaagtcgcacagacgggacgtgggtagattttgaaagccgg
cttgtgccgcctgtaggagagacaagcccagttcaggcattccagctggcgccaagcatg
gaggtcgcagagaagcgagtttttgaagggttgggcctgacttggcgagatccgaccgag
aggtgcacagggtga
DBGET
integrated database retrieval system
