Pochonia chlamydosporia: VFPPC_04646
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Entry
VFPPC_04646 CDS
T09407
Name
(RefSeq) DNA repair protein Rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03440
Homologous recombination
pchm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VFPPC_04646
03450 Non-homologous end-joining
VFPPC_04646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pchm03032
]
VFPPC_04646
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_04646
DNA replication proteins [BR:
pchm03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
VFPPC_04646
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
VFPPC_04646
BRCA1-C complex
VFPPC_04646
NHEJ (non-homologous end-joining)
MRX complex
VFPPC_04646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
AAA_13
COG6_N
Spectrin
Seryl_tRNA_N
Exonuc_VII_S
AAA_29
NPV_P10
DUF948
AAA_16
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
28847961
NCBI-ProteinID:
XP_018145259
UniProt:
A0A179FTR6
LinkDB
All DBs
Position
3:2638153..2642169
Genome browser
AA seq
1307 aa
AA seq
DB search
MSRIDKLSISGVRSFSPSVREAIQFNTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSK
GGAFIHDPKLCGEKEVMAQVKLQFRSINDRQHVATRSMQLTVKKTTRSQKTLDCSLVVVN
NGERTTTSTRQAQLDEMIPERLGVSPAILDAVIFCHQDESLWPLSEPAALKKRFDEIFEA
LKYTKAIDNLKVLRKKHVEQLGKLQNDEAHNKTNKDRGERAEKRMTGLQAEIEDAREKCE
SLSTEMQETQEKIRQKHEQANSFLQIVQNLSNKKEQLEYRQDAVNELRQTFDELHDDDAS
LETALSQYEQSMERYREDAEQNKSQYSELQQELVDSRKNLSTKLSEQGKHQSDKDKYERQ
VKARMEMIQEAAATHGFRGFDENLTEQHVKSFNERIQKLLSEKKRDLERLQKDNAAELDK
ATGVITDLEGRKAARTQDRVSAKQRIGAIEKRTGILQNEASLIDVDEGAKAILEGQLEDI
GARFDRSQAEMEKSNWDKQISDENDKLWQLENENEKLGRELVECTRLASERAQLDYRKKE
VADRKRKLETLTNTWRPKLSAAIGSDWEPDALEPKFQTVLAQQNKSLQDARRSLDQIKQK
QQKVEYKLKNARESQESKTRDAEKCKQQVLAALREVRDGASIDDYTEEVASVEQQVEDLR
NELSLFDALFDYYNKCKRMLESKKKCLLCERHFDDSQSASLDRLSKKIEKNLDPKGKVDV
EKDLKEAMASLESLRSVRSSYDTHERLVSELPSIRDECKTIESEYDALERQLEDHESRVA
SEDERVRDLDDLSKTVSTMAQLVKDIQDSEGQVDRIMSQQMSGGVTRSADEIHELQASIG
EQMRGLKNRITKLTTDRQRMKDQLSSLELERSELRNKIGRAAGQLDKKNDIQNQIQTLKD
DMAHQRETIQRADEELEKIEPSIVDARSARDETLRKGRGKEQVIIDERDAIANSVSEIKM
LDSDIQDYNDRGGPSNLASNQRAIAALEKSIANTEKEIADLTVRANKLKQDIDSGDRKKK
NISDNLNYRKHLRTLEVLRREIEELEDRNAHEDYERLQSEARSLENQSNRLLAERGSVMG
TMKTKDEELGRLLQEWEMDYKGAKQKYREAHIRVETTKAAIEDLAQCGAAVDKAVMQFHS
MKMAEVNRIAGELWQSTYQGTDIDTILIRSDNESTSGKRNYNYRLCMVKQDTEMDMRGRC
SAGQKVLASIIIRLALAESFGVNCGLIALDEPTTNLDRDNIKSLAESLHMIIKTRQAQSN
FQLIVITHDEDFLRHMRCSDFCDSFFRVKRDATQNSVIVRESITKIF
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaatcgacaaactctccatttctggagttcgatcttttagtccgtcggttaga
gaggctatccaattcaatacacccttaaccttaatcgttgggtacaatggatctggaaag
accaccatcatcgagtgtctcaaatatgccaccaccggtgagctgccgcctaatagcaaa
ggcggcgcatttattcatgaccccaagctctgtggcgagaaggaagtcatggcccaagtg
aaattacagtttcgctccatcaacgaccgtcaacatgttgccacgcgaagcatgcagctg
acggtaaagaaaacgactcggtcccagaaaactctagattgctcacttgtcgtggtgaat
aatggcgagcgaacgactacttctacaagacaggcgcaacttgacgaaatgattcctgag
agacttggcgtctcgcctgccattctcgatgcagtcatcttttgtcatcaagatgagtct
ctgtggcctctaagcgaacctgctgccctgaagaagcgattcgacgagattttcgaagcc
ctcaagtacaccaaggccattgacaatttgaaggtgctccgcaagaagcatgttgagcaa
ttgggcaagctgcaaaatgatgaagcgcacaacaaaacaaataaagaccgtggcgagagg
gctgaaaagcgaatgactggcttgcaggccgagattgaggatgctcgagaaaagtgcgaa
tctctctcaactgagatgcaggaaactcaggagaagattcgccaaaaacatgaacaagcc
aacagttttcttcaaattgttcaaaacctcagcaacaagaaggaacagctggaataccgt
caagatgccgtaaacgaactgagacaaacgtttgacgagctccacgatgatgacgcatcc
ctcgagaccgcactctctcagtacgaacagagcatggaacgataccgagaggacgccgag
caaaacaagtcgcagtatagcgaactgcaacaagaacttgttgactctcgcaagaatctt
tccacgaaactctccgaacagggaaaacatcagtcggataaggataaatatgagcgacaa
gtcaaggctcgcatggagatgatacaagaagctgcagctacgcacggcttccgaggcttt
gacgagaacctgacggaacagcatgtcaaatcattcaacgaaaggatccaaaaacttctg
agcgagaaaaagcgggatcttgagcgcttacaaaaagacaacgccgcagaacttgacaag
gcaactggcgtaattacggacttggagggccgaaaagctgccagaactcaggatcgtgtg
tcggcaaagcaacgcattggagccattgaaaagcgcactggtattctgcagaacgaggcc
agtctgatcgatgttgatgaaggggccaaggccatcttggagggtcagctcgaggatatt
ggtgcgcggttcgacaggtcgcaagctgagatggaaaagtccaattgggacaagcaaata
tccgacgaaaatgacaagctgtggcagcttgagaatgagaacgagaaattgggccgggaa
cttgttgaatgcactcgtcttgcatccgaaagggcacagcttgattatagaaagaaggag
gtggccgacaggaaacgcaagcttgagacgctaactaatacttggaggcccaagctttcc
gcggcgattggcagtgattgggaacctgacgcattggaaccaaaattccagactgttctc
gcccagcagaataagtcactccaggatgctcgcaggagtctggatcaaatcaaacagaag
cagcaaaaggtggagtataagctcaagaatgctcgggaatcccaagaatccaagactcga
gatgcggaaaagtgcaaacaacaggtactggcggcccttcgcgaggttcgagacggcgca
tccattgacgattatacggaagaggttgcgtcagtagagcagcaggtggaggatctccga
aacgaactgagtctgtttgacgcccttttcgattactacaacaagtgcaagcgaatgctc
gaatccaaaaagaagtgtcttctctgcgaacgacactttgatgatagtcaaagtgccagc
ttggaccgcctgagcaaaaagattgagaagaatcttgatccaaagggcaaggttgacgta
gagaaagatctcaaggaggctatggctagtctggaatcactacgttcagttcgttcgagt
tatgacactcacgaacgtctcgtttcagagcttccatctattcgtgacgagtgcaagacg
atcgagagcgagtatgatgctcttgaacgacaattggaagaccatgaatctagagttgct
agcgaggatgagcgggttcgcgatttggatgacttgtccaagacagtttcaaccatggcc
cagctggtcaaggatattcaggactcggaaggccaggtggaccgcataatgtcacagcaa
atgtctggcggagtcacccgaagtgccgatgaaatacatgagctgcaggctagcatcgga
gaacaaatgagggggttgaagaaccggataacgaagcttaccacggacagacagcgcatg
aaggaccaattgagttctctggagctcgaaagaagcgagctcaggaacaagattggacgt
gcggccgggcaactggacaagaagaatgatatccagaaccagatacagacactcaaggac
gacatggctcatcagcgggagaccattcagcgagctgacgaggagctggagaagatcgaa
cctagtattgtcgatgccaggtctgctcgggatgaaacgcttcgaaagggccgcggcaag
gagcaggtaattatcgatgaacgagacgccatagccaactctgtcagtgaaattaaaatg
ctcgacagcgacatacaggactacaatgaccgcggcgggccgtcaaacttggcttcaaat
cagcgggcaatagcagcactggaaaagtccatcgccaacaccgaaaaggaaattgcagac
ctgaccgtgcgagcaaacaagttgaagcaagacattgacagtggtgaccgcaagaagaag
aacatcagcgataacctgaactaccgaaaacacctgcgaacgctggaggttttgcgacgg
gagattgaagagcttgaggatcgtaacgctcacgaagattacgagcgcctgcaaagcgaa
gcacgcagtctcgagaaccaatccaaccgcttgcttgcagaacgaggatcggtcatgggc
accatgaagaccaaagacgaagaactcggcagactcctgcaagaatgggaaatggactac
aaaggggccaagcaaaagtaccgcgaggctcatatccgcgtggaaaccaccaaggccgcc
atcgaagatttggcgcaatgcggagcggccgtcgacaaggccgtcatgcagttccactcc
atgaagatggcagaggtgaaccgcatcgccggcgagctctggcagtcgacataccagggc
accgacatcgacaccattctcattcgttccgacaacgaatccacttccggcaaacgcaac
tacaactaccgcctctgcatggtcaagcaagacacggagatggacatgcgcggccgctgc
tcggcaggccaaaaggtcctggcgagcatcatcatccgtctcgcgctcgcggaatccttc
ggcgtgaactgtggcctgattgccctcgacgaaccaactacaaacttggaccgtgacaac
atcaagagtctagcagagtctctgcacatgattatcaagacgagacaggcgcagagtaat
ttccaactcattgtgattacgcacgacgaggacttcttacgacacatgcgatgtagcgat
ttctgcgatagttttttccgcgtgaagagggatgccacgcagaacagtgtcattgtaagg
gagagcattaccaaaatattctag
DBGET
integrated database retrieval system
