Pochonia chlamydosporia: VFPPC_04725
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Entry
VFPPC_04725 CDS
T09407
Name
(RefSeq) DEAD/DEAH box RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_04725
03041 Spliceosome [BR:
pchm03041
]
VFPPC_04725
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_04725
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_04725
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VFPPC_04725
mRNA cycle factors
Common to processing body (P body) and stress granule
VFPPC_04725
Spliceosome [BR:
pchm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VFPPC_04725
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VFPPC_04725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
28848027
NCBI-ProteinID:
XP_022284488
UniProt:
A0A179FS95
LinkDB
All DBs
Position
3:2900974..2902998
Genome browser
AA seq
553 aa
AA seq
DB search
MQAATATSNGWVEPQKVDYTAFNAETQSNGQFDGEAPIYQWNDDFGDVGPKYEILELELF
GDPQSRHDRAGLDFSKIEQISVEQEGPVRIQPLRTFKDAGLHPVMAENIKLMGYDAPTPI
QKYTIPSMLQGHDVIGIAQTGSGKTAAYLIPILSRLMGKAKKLAAPRPNPTTFREGVDAV
TAEPLVLVVAPTRELAVQIFNEARKFCYRSMLRPCVVYGGLPMKEQINLLSKGCDVLVEQ
DEGNVKYGLFSATFPKAARDLAKENLSAAHVRFRVGRAGSTTENIKQVILATERDEKRDT
LLHLLSQMTGVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRSGN
APILIATGVTARGIDVRNVMHVINYDLPSVEHGGIEEYTHRIGRTGRIGHRGIATSLFDP
INDDALGSVLTRTLLETKQEVPEFLQMHVPEGDAAKNLRFETESDYDPNEAEDHAQTNGT
SGNDPWGGAQENNDNGNSGWGQSGSSAPNGSGQPAATPAAATKNGWGAEPAAAASAPANG
GWGVDAQVAPVGW
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctgcaacggctacctcgaacggctgggttgagccccagaaggtcgattacacg
gccttcaatgccgagacccaatcgaatggacagttcgacggtgaagctcccatttaccag
tggaatgatgacttcggggacgtcgggcccaagtacgagatcttggagctggagctcttt
ggcgatccacagagtcgccacgaccgtgctggcttggacttctcaaaaattgagcagatc
agcgttgaacaagaaggacctgtgcgaatccagccgcttcgtaccttcaaagatgccggc
cttcaccccgttatggctgagaacatcaagttgatgggatatgacgcacccacgcccatc
cagaagtacaccattccatccatgcttcagggccatgatgttattggaattgctcagaca
gggtcgggcaaaacagctgcgtatctgattcctattttgagcaggctaatgggaaaagct
aaaaagttggctgctcctcgtcctaatccaaccacttttcgcgaaggcgtcgatgcagtg
acggctgagcccttggttttggtggtcgcgccaacccgagagttagctgtgcaaatcttc
aacgaagctcggaagttctgttatcgttctatgcttcgcccatgcgtcgtgtatggtggc
ttgcctatgaaggagcagatcaatctcctcagcaaaggctgtgatgttcttgtcgagcaa
gacgagggcaatgtcaagtatggactcttctccgccacctttcccaaggctgctcgagat
ctggccaaagaaaacttgtctgcagcccatgtgcgtttccgtgttggccgcgccggcagt
accacggagaacatcaagcaagtcattcttgctactgaacgcgatgagaagcgtgatacc
cttctccacctcctcagtcagatgactggcgtgagaaccatcattttcgccaacagtcgc
cgagaggtcgataacctagatgacttcttgtacaatatggggcttcccgtcacgtccatg
cattctgagcgaacccaaaaggagcgtgaagccgcattgcgttcttttcgatccggcaac
gctcccattctcattgctactggtgtcactgctcgtggcatcgatgtgcgaaacgtaatg
cacgttattaactacgaccttccatccgttgagcatggcggaatcgaagagtacactcat
cgaattggtcgaactgggcgtatcggccatcgcggcattgccacttcgctgtttgatcct
atcaatgacgacgccttgggcagtgtcctcactcggacgcttcttgaaacaaaacaggaa
gttccagagttcttgcagatgcatgtgccagaaggcgatgcggcgaagaaccttcgcttt
gagacggagtcggattacgatcccaacgaagcagaagatcatgcacagactaatggcacc
tcgggcaacgacccctggggcggagcgcaggaaaacaatgataacggtaattctggatgg
gggcagtctggttccagcgctccaaatggatctggacaacctgccgcaactcctgccgct
gctaccaaaaatggctggggggccgaacctgctgcagcagcttctgcccctgccaacggc
ggctggggtgttgatgcccaagttgcccctgttggatggtaa
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