KEGG   Pochonia chlamydosporia: VFPPC_04789
Entry
VFPPC_04789       CDS       T09407                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03013  Nucleocytoplasmic transport
pchm03015  mRNA surveillance pathway
pchm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VFPPC_04789
  09122 Translation
   03013 Nucleocytoplasmic transport
    VFPPC_04789
   03015 mRNA surveillance pathway
    VFPPC_04789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_04789
   03041 Spliceosome [BR:pchm03041]
    VFPPC_04789
Enzymes [BR:pchm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VFPPC_04789
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     VFPPC_04789
Spliceosome [BR:pchm03041]
 Complex C
  Other components
   EJC/TREX
    VFPPC_04789
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VFPPC_04789
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 DUF4844
Other DBs
NCBI-GeneID: 28848069
NCBI-ProteinID: XP_018145413
UniProt: A0A179FTZ6
LinkDB
Position
3:<3139052..>3141145
AA seq 434 aa
MSHEEDLIDYSDEEIGANETAAAGSNGKKGELAASTDVDKKGSYVGIHSTGFRDFLLKPE
LLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQVMMFSATLSD
AIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIF
VKSTIRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSADASSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtcgcacgaggaggatctcatcgactactctgatgaggagatcggagccaacgagacc
gcggccgcgggctctaacggcaagaaaggcgaactcgctgcctctaccgatgtcgacaag
aagggtagttatgttggtattcactcgaccggcttccgcgacttcctgttgaagcctgag
cttctccgtgctattggcgactgtggtttcgagcatccatcggaggtccaacaaacctgt
attcctcaagcccttctcggaggtgacattatttgccaggccaagtctggtcttggtaag
acggctgtcttcgtccttgccaccttgcagcaggtcgaacccgtcaacggagaggtctcg
gtggtcgtcatgtgtcacacacgtgaacttgcctaccagatccgtgatgagtacaatcga
ttcagcaaatacatgcccgacatcaagactggtgtgttctatggtggtactcccatcaag
accgatatggaaaccttgaagaacaaggacacctgcccccacattattgttggtactcca
ggtcgtctcaaggctcttgtccgcgacaaggctctccgccttggcagcgttcgcatcttc
gttcttgatgagtgtgacaagatgctcgaccagcccgacatgcgcactgacgtgcaggat
gttttccgcgccacccctacccagaagcaggtcatgatgttctcagctaccctgtctgat
gccatcaagcccatttgcaggaagtttatgcagaaccccaccgagcactatgtcgatgag
gacaccaagctcaccctgcacggtctccagcagtactacatcaagctcgaggagaaggag
aagaacaggaagctcaatgagcttcttgatgacctccagttcaaccaggtcatcattttc
gtcaagagcaccattcgcgctaccgagctggacaaactgttgcgcgagtgtaacttccct
tcgatcgctgtgcactctggcgtgagccaggaagaacgtattaaacgttacaaggagttc
aaggagttcaagaagagaatctgcgtcgccaccgatgtttttggccgtggtattgatatt
gaacgtatcaacctggctatcaactacgatctgtctgccgatgctagctcgtacctccac
cgtgtcggtcgtgctggccgtttcggtaccaagggtcttgccatctcctttgtcagctct
gaccaggatcaagaggttctcaaggagattgagaagcgattcgaggttgccctgcctgaa
ttccccaaggagggcgtcgatgccagcacttacatggcttcgtaa

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