Pochonia chlamydosporia: VFPPC_04818
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Entry
VFPPC_04818 CDS
T09407
Name
(RefSeq) RNA polymerase II mediator complex component Srb8
KO
K15163
mediator of RNA polymerase II transcription subunit 12, fungi type
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_04818
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
VFPPC_04818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med12
Med12-LCEWAV
Motif
Other DBs
NCBI-GeneID:
28848096
NCBI-ProteinID:
XP_018145447
UniProt:
A0A179FTA3
LinkDB
All DBs
Position
3:complement(3241057..3245775)
Genome browser
AA seq
1536 aa
AA seq
DB search
MSSRTPMGVQPRQPQRGLGSTLQVQRPSNHHQRSISSSQQQYLPTSPVRRDANNGLDANA
EPAEALSGRHVSTPRRQGSRLRLELSNELIAAGPPSATESPQTLTPSRMMPLPDPMETDG
MSPALSRASQQDSDNPPMPMPKRRLPQASQTVPSTRPAPPPPTPVKKDVRPKPYTVEVPA
ASPRYANTHRNETTSRDPFSKSLFSGHADFFPWSGNHHEDEWSTEAIQKGTWDRGSQNEA
SSARIAIFPALKQKTGLNALSTIFMGVLNQRRIRGQITAPSTFKPPPRVTLTDTKREIWL
KDLANPAISLRRLSRTIPHGIRGRTLLDQCLNKDVPTERAVWLAKCVGANEIRAFKRKGA
SGAFVLGGELKWIRDWTVFVEQFVESIVSGFGEPDWKSKVTYAIRLATCLYSEQLLDRDH
YLEWIISGLENSPQSRIPMWILIGQIYWADILQSRKCGRRLVFALLNHLNTIENDPDRDI
LLQLSSQLSTLLVSLLKTNPESFICPPAWQRFGETLRLALPTDDSFAQAAYNVVKQRNTR
LLVANTTSPPSGRQYLVQLLDSTLQGQCVSGLSTRCWASADDKPSILKTVVEWATSLHRP
GLAKVYVAARLIKSWSIFRVSATSTILDVLGDIPSNDKIRKRLIIRLVGELVRCGHFSVA
QYMQWLIGRGGLHDADEIDPVDGPCASRLLVELPVDCLHEEQNSQRGSLLRRAGHYSVGD
EANDITSALQYVDGALGLSTYLNDSESPRKALPLKKLLRRIISSSRAVQSAIGSHLYEVV
TTQLPHKPDFVMTLAVFSSIRTMMETIEDFSMLSGILKTCSTGPDVDILAACVDTVNAHL
DIFVAMDSAETLFDMYIERLKAMSRDQGIIVRSLLASLSSLAARLPQREDLAKQLAQELA
QNDRSNAIDACSPVSDSMAAQAQTAEGEVSEQIDKLLASGNVIDHPTMNRLFRYVILRLE
SGWGKLDDSRRVFSSILSRLRMLDAPHFDKLMADWVSHIRTLKERPSLPELFPLLVSFGC
LSMATILHTANASPTNSDSAPDAATSKAATYLQELLQLIIVKLPATASLDSEESYRFQIH
QQSAKFEHGKGLLALIRNSLVEYSALQSSARVGTLPLDDVDCQDRLLETMRLLVVADSAN
VADVLSMNTLPPGATSLAHKIVTRLLLPEADADQNPSFNQILSLANELTIPFCQLKLNLD
LSMSLPSASASAGEEGEPSRFEAFAKAMDNAIESQNIMWTSMLPCLSDDITQSLNTEAHT
RFLDLMPSSKSESVSTDTTDENRIHLAENLLGVIEAIISGQPPSKSASLTSNLVDKLSEL
WEIIAVQDEDRAMAKKEVLEHWLPTLLRFITLHSISAEPASIATPGPASSVKPTTTANHE
ARARIILVLCGLMLEMETLPQELTGSLVQQIFDIAILLVDALPDDLRTQCAKSVLFLSGT
TANASTTSDPRMYYLFSTPHPTAAENLKLAHRDKAAMPLTAAVRGMGAMYGIGPMSNERL
SPFVLRRWEILSEPTPNVGENDTSLSLGLFEAIKIQ
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgaggacgccaatgggtgtccagccgcgacagccccaacgagggctcggctcg
acgctacaggtccaacggccttcaaatcatcaccaacgaagcatatcgtcttcacagcaa
caatatctaccaacatcacctgtccgccgagatgccaacaatggcctcgatgccaatgcc
gaacccgccgaggctctgtcgggtcgccatgtgtccacaccaagacgacagggctcgaga
ttacggctcgaactgtccaacgagctcattgccgctgggccaccctcagctacagaatca
ccacaaactctcacgccttcgcgaatgatgcctctacccgatcccatggagaccgatggt
atgagcccagccttgtcaagggcttcacaacaagatagcgacaatccacccatgccaatg
cctaagcgacgactgcctcaagcatcgcagaccgtaccttcaacgcgcccggctcctcca
ccacccactcccgtcaagaaggatgtgcgaccgaagccctatacggttgaagtcccggcc
gcgtctcctcgatacgcaaacacccaccgcaacgagaccaccagccgagatccatttagc
aaaagcctattttctggccacgcagacttcttcccctggtcgggcaaccaccacgaggat
gagtggagtactgaggctatccaaaaaggcacttgggatagaggcagccaaaatgaggcg
tcttcggcacgaattgccatattcccagccttgaaacagaagactggcctcaatgcgctg
tctaccatattcatgggggtgctaaaccagcggagaatccgtggccaaattacagcaccg
tcaacctttaaaccgccgcctcgagttacactcacagacacaaagcgagagatttggctc
aaagatttagcaaacccggccatatctctaagacgccttagtcgaactattccgcatggt
atccggggaaggacgctgctcgatcagtgcctaaacaaagacgtacctacagaacgcgca
gtctggttggccaagtgtgttggtgccaacgagattagagcattcaaaagaaaaggagca
agcggcgccttcgtcctaggaggtgaattgaaatggattagagactggactgtatttgtt
gagcaatttgttgaatccattgtgtctggatttggcgagcccgactggaagtcaaaagtg
acatacgctattcgcctcgctacatgtctctactctgaacagctactcgatcgcgaccac
tacctggaatggattatctcgggactggaaaacagcccacagtcaagaatccctatgtgg
atactaattggccaaatatactgggcggacattttacaatctcgcaaatgtggccggcgc
ttagtgtttgccttactaaaccacttaaataccatcgaaaacgatcctgatagagatatt
ctcctccaattgtctagccagctatccacgctattagtttcccttctcaaaacaaacccc
gaaagtttcatttgccctcccgcgtggcagcgatttggcgagacattgagacttgcgtta
ccgacggatgactcttttgctcaagccgcatacaatgtggtgaagcaacgaaacacgagg
cttctagttgccaacacgacctcaccaccaagcggtcgccagtacttggtgcagttgctg
gactcaactctccaggggcaatgtgtctccggactgtccaccagatgttgggcatcggca
gatgataaaccgtcgatattgaagacagttgtagagtgggctacttctctgcaccgccca
gggctagccaaggtatatgtggctgctaggctcatcaaatcttggagtatattcagagtt
agcgctacatcgacaatccttgatgttcttggtgacataccttccaacgacaagattagg
aagagactcattattcgactggtgggggaactagtgcgatgcggtcacttctcagtcgct
cagtacatgcaatggctcatcggtcgcggtggtctgcatgacgctgacgaaatcgaccct
gtggatggcccttgtgcttcccgcctcctagttgaacttcctgtcgactgtctccatgag
gaacagaactctcaaagaggcagcctgcttcgacgcgccggacactattctgttggtgac
gaggcaaacgatattacctcggcgctgcaatatgtggatggtgcactcggactatcaaca
tacctaaacgattcagagtctcctcggaaggctttgccgctgaagaagctgctacgaagg
attatcagcagcagtagagctgtacagagtgccattggatctcacctgtacgaagttgtg
acgactcaactccctcacaaacccgacttcgtcatgactttggctgttttcagctcaatt
cgcacaatgatggagacaattgaggacttttcgatgctctcaggcattctcaagacttgt
tcaactggtcctgatgtagacatactcgcagcttgcgttgacactgttaacgcacatcta
gacatttttgtggcgatggactctgcggaaactcttttcgatatgtatattgaacgacta
aaggccatgagccgagaccaaggaatcattgttcgctcgctacttgcatctctgtcgtcc
ttggctgcacgactaccccaaagggaggaccttgcaaaacagcttgcccaagaactagct
cagaacgatcggtctaatgctattgatgcctgctccccggtatcggacagtatggcagcg
caagcgcaaacagccgagggggaggtctcggagcaaatcgacaagctcctcgccagcggc
aatgttatcgatcatcctactatgaaccgtctcttccgatatgtcatcctgaggttggaa
tctggctggggaaaactagacgatagccggcgcgtattttcgtcgatattatcgcgatta
cgcatgctggacgctcctcactttgacaagctaatggctgactgggtcagtcatatcaga
actctaaaggagcggccgtcgctgccagaactctttcctcttctcgtcagctttggttgt
ttgtcaatggcgacaatcctccatactgccaacgccagtcccaccaactcagactcggct
ccggatgcagctacctcaaaggcggccacgtatttgcaggaactcttgcaacttatcatt
gtgaagttaccagcaaccgcatcacttgattcagaggaatcttatcggttccagatccac
caacaaagcgccaagtttgagcatggcaagggtctgctggctttaatccggaactccctc
gttgagtactccgctcttcagtcgtctgcaagagttggtaccctacctcttgatgatgtg
gactgccaggatcgtcttttggagaccatgagactgttggttgtggcagattcagcaaat
gtggcagacgtgttgagcatgaatacgctccctcccggagcaacatccttggcccacaag
attgtcaccaggctcttattgcctgaagctgatgctgaccaaaacccgtcatttaaccag
attctctctcttgcgaacgagctcaccattcctttctgccagctgaaactcaatctagat
ctgtctatgagtctgcccagtgcatctgcatctgctggcgaggagggagagccttcacga
tttgaagcgtttgcaaaagctatggacaatgccattgagtcacaaaacataatgtggaca
agcatgctgccatgtctcagcgatgacatcacccaaagcctaaacacagaggcccataca
aggtttttggacttgatgccgtcaagtaaatcagagtccgtgtctaccgatacgacggac
gagaaccgcatccatttggcggaaaatctgcttggagtcattgaggcgattatttcgggc
cagccgccgtcaaagtcggcctcacttacaagcaacttggttgacaaactgtctgagctc
tgggagatcatcgcggtgcaagatgaggaccgggcgatggctaagaaggaggtcttggag
cactggctccctacgctgctacgattcatcaccttgcacagcatttctgcagaaccagca
agcattgcaacgccagggccagccagctcagtcaagccaacgacaactgcaaaccacgaa
gcacgagctcgcattattctggttttgtgcggtctcatgttggaaatggagacgttgccg
caggaactgacgggatctcttgttcaacagatattcgacattgcgatcctcctggtagac
gctcttccagacgacttgcgaacacaatgcgccaaatcagtcctctttctgtccggtacc
acagcaaacgcaagtaccacgtcagaccctcgcatgtactacctgttcagcacgccacat
ccaacagctgcagagaatctgaagctcgcacaccgcgacaaggctgcaatgccattaacg
gctgcagtccgtggcatgggagccatgtatggtattgggccgatgtcaaacgaaagactc
agtccgtttgtgcttcgtcgatgggagattctcagcgaaccaacccccaatgtaggcgaa
aacgacaccagcctcagcttaggcttgtttgaagcaatcaagattcaatga
DBGET
integrated database retrieval system
