KEGG   Pochonia chlamydosporia: VFPPC_05120
Entry
VFPPC_05120       CDS       T09407                                 
Name
(RefSeq) nuclear pore complex subunit
  KO
K14299  nucleoporin SEH1
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    VFPPC_05120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_05120
   04131 Membrane trafficking [BR:pchm04131]
    VFPPC_05120
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     VFPPC_05120
Membrane trafficking [BR:pchm04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    VFPPC_05120
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_EML Beta-prop_IP5PC_F Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 28848357
NCBI-ProteinID: XP_018145825
UniProt: A0A179FTL6
LinkDB
Position
3:4262481..4263836
AA seq 422 aa
MAASGPPSPISEKQAFDLNLQHGHKDLVQAIAFNTYGDRCATGSVDGKIRVFNRHKDGTW
RLCDTWTAHGGEVLELQWLPATIYPNLIASLGIEGWFRLWAEDPSAAPGRRFCAGRSVGG
RPAFDTRSTRAPYRSFSMKHNEETRHTYLALLASDGRLTIYENDQPENLSEYSSIDEFSI
CNKPNRGEEVSFKVRFDPNPEPCYTALRAGVSADSLGIVVAGMDTVKIYRSRDIVTASYG
VAQTQKEFYLAAEIPGHRGLVRDVAWAPGNIRGYDMIATACQDGYARVFRIDTPFSEDDG
KSWSANDLLKSRGHASSKDSPTKDEAEKHPHPSSLSASLAKSGNASDRQWSGQPGQVHHT
YREISRLDSHRTPVWRVGFDDDGQILGSTGDDGRLLFYRQTPDGVWAKSSELVMVKARMA
AP
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggccgcctcggggcctccatcacccatctccgagaagcaagccttcgacctgaacctc
caacacggacacaaggacctcgtccaagcaatcgcattcaatacctacggtgaccgatgc
gccaccggctcagtagacggcaagattcgcgtattcaacagacataaagacggtacttgg
cgcttatgcgacacatggacagctcacggaggtgaagttctcgagctccaatggctcccc
gcgacaatataccccaacctaatcgcctccctcggaatagaaggctggttccgcctctgg
gccgaagacccctccgccgcaccaggccgccgcttctgcgcaggtcgatccgtcggcggc
cgaccagcctttgacacacggtccacacgcgcgccctaccgctcattcagcatgaagcac
aacgaggaaacgcgacacacctacctcgccctcctggcctcagacggccgcctcaccatc
tacgaaaacgaccagccagaaaacctgtcagagtactcgtcgatcgacgaattcagcata
tgcaacaagccgaatcgcggagaagaagtctccttcaaggtacgcttcgacccaaatcca
gagccctgctacacagccctacgcgcaggcgtcagcgccgactccctaggcatagttgtc
gcggggatggacaccgtgaagatatacagatcgagggacatagtcacggcatcttatgga
gttgcccagacccaaaaggagttttatctcgcggcagagatccccggccacagagggcta
gtgcgggatgtagcatgggcgccgggcaatattcgcggatacgacatgatagcgacggca
tgtcaggacggctacgcacgtgtatttcgcatcgacacacccttctccgaagatgacggc
aagtcctggtctgcaaatgacctgctcaaatcgaggggccacgcatcgtccaaggactcg
cctaccaaggatgaggcggagaagcacccgcatccgtcgtcgctgagcgccagtctcgcc
aagtcggggaacgcgagcgatagacagtggtccggacagccagggcaggtgcatcatacg
tatagggagatctcgcgactggatagccataggacacctgtgtggagagtgggctttgac
gacgatggacagattctgggcagtacgggtgatgatgggcgtttgttgttttatagacag
acgccggatggagtgtgggctaagagctcggagttagtaatggtgaaggcgaggatggcg
gcgccgtga

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