Pochonia chlamydosporia: VFPPC_05366
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Entry
VFPPC_05366 CDS
T09407
Name
(RefSeq) DNA-directed RNA polymerase II polypeptide
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03020
RNA polymerase
pchm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VFPPC_05366
09124 Replication and repair
03420 Nucleotide excision repair
VFPPC_05366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_05366
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_05366
Enzymes [BR:
pchm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VFPPC_05366
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
VFPPC_05366
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
VFPPC_05366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
28848567
NCBI-ProteinID:
XP_018141328
UniProt:
A0A179FER1
LinkDB
All DBs
Position
5:98970..102864
Genome browser
AA seq
1261 aa
AA seq
DB search
MADYEEDYDYENYGEDDEGITPEDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNE
YSTITLDQPNPPSTADKQIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTY
ASPLYINITKKVSVAVERTLGYGEMDDAQEKEAKKTGELPTKLVWEPEESTEDDDTGKSE
DWKNMVFVGKLPIMVKSKICHLSREHEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSA
ANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSLTLKLYGKGDSARGGFGQTIHTTLPF
VKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIG
KRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRR
EPDDRDHFGKKRLDLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTL
SNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ
LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLR
YPHATKIFVNGVWVGIHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRV
MRPVFTVQQEDDPETGIEKGHLVLTKELVNKLAKEQAEPPEDPNEKIGWEGLIRAGAVEY
LDAEEEETSMICMTPEDLELYRLQKAGVALDDDNGDDLNRRLKTKTNPTTHMYTHCEIHP
SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLAT
TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKK
VGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQESQDL
GTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKVPQIGDKFASRHG
QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDAT
PFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHA
RARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEI
CGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFTDRSGASI
R
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggcggactacgaggaggattatgactatgagaactacggcgaggacgatgagggcatc
acccccgaggattgctggaccgtcatctcctccttcttcgataccaagggcctggtttct
cagcagactgattcgttcgacgaattcactcagacgacgattcaggacctcgttaacgaa
tattccaccatcacactcgaccaaccgaaccctccctcaaccgcggacaagcagattgcc
cttcgccgatatgagatcaaatttggaaccgtcatggtgtcccgtccaaccattagtgaa
acggatggaaccgtaacatcgcttctgccctacgaatgtcgtgaccgcaacttgacttac
gcaagtcccctgtatatcaatatcaccaagaaagtctcagttgcagttgagaggacacta
ggatacggggagatggatgacgcccaagaaaaagaggcaaagaagactggcgaattgcct
acaaaacttgtctgggaaccagaggaaagcaccgaggatgacgacaccggcaagtctgag
gattggaagaacatggtgtttgttggaaaactacccatcatggtcaagtccaagatttgc
cacttgagtcgcgagcatgaagacagcttgttcatggtcaacgagtgtccctacgaccaa
ggcggttacttcgttatcaacggtagtgaaaaggtgctcattgctcaggagcgttccgcg
gccaacatcgttcaagtcttcaagaaggcccagcccagtccttacacatatactgctgag
atcagaagtgcattggagaagggttcgcgtcttatttcgagcttgaccttgaagttatat
ggcaagggtgattctgcccgtggtggcttcggccaaaccattcacacaacccttcctttc
gtcaagtccgacctccccattgccattgtcttccgtgctctgggcgtcgtgtctgacgaa
gatatccttaaccacatctgctacgacagaaaagacagccaaatgctcgaaatgcttcga
ccctgcatcgaagaagccttttgcgtacaagatcgagaagttgcgctcgacttcatcggc
aagcgaggtaaccgtgatcaggctggtctgggccgagagaagcgtgttcgtgttgcaaaa
gacattttgcagaaggaaactctaccccacatctctcaaaccgaaggtagtgagacgaga
aaagccttcttcctcggttacatggttcataaactccttcagtgtgctcttggaagacgt
gagcctgacgaccgcgatcactttggcaagaagcgattggatctggcgggtccgttgttg
gccaaactcttccgtggtatcattcgcagaatgaacacagaattgtccaattatctgcga
cgatgtgttgagggcaacagacatttcaatttggccgttggaatcaagcctggcaccctt
tccaacggtttgaagtactcccttgccactggtaactggggagaccagaagaaggccatg
agctcgactgccggtgtgtctcaagtgctgaaccgttataccttcgcctcgactctgtcc
cacttgcgtcgtaccaacacacctattggtagagacggaaagctggctaagccgcgtcag
ttgcacaacacacattggggcttggtctgccctgccgagacaccagaaggtcaagcttgt
ggtctcgtcaagaatttgtcattgatgtgttatgtcagcgtgggttcgccctccgagccg
ttgattgagttcatgatcaaccgtggcatggaagtcgtggaggaatacgagccgttgaga
tacccccatgccaccaagatttttgtcaacggtgtatgggttggcatacaccaagacccc
aagcacttggtgagccaggtcttggacactcgacgaaagtcgtatctgcagtacgaagtg
tccctcgtacgagaaatcagagaccaggagttcaagattttctccgatgccggccgtgtg
atgcgaccagtgttcactgtacagcaggaagacgacccggaaaccggcatagaaaagggc
catctggttttgaccaaggagttggttaacaagcttgctaaggaacaggctgagccaccc
gaggatccaaacgagaagattggctgggagggattgattcgagccggtgctgtcgaatat
ctcgacgctgaagaagaagaaacctccatgatttgcatgacgccagaggaccttgaattg
tatcgtcttcagaaagctggtgttgctcttgatgacgacaatggagatgaccttaacagg
cgtctcaagaccaagaccaatcccaccacccacatgtatacacattgtgaaattcacccc
agtatgattcttggtatctgcgctagtattattccgttccccgaccacaatcagtcacct
cgtaatacctatcaatctgccatgggtaagcaggccatgggtttcttccttaccaactac
tctcgccgcatggatactatggccaatattctctactatccccaaaaaccgcttgctacc
acacgatctatggaatttctcaagttccgtgaattacctgctggtcaaaatgccatcgtc
gctattgcctgttattcgggctacaaccaagaagattccgttattatgaaccagagtagt
atcgatagaggcttgttccgaagtctgttcttccgttcatactctgaccaggaaaagaag
gttggtttgaattacaccgaagtgtttgaaaagccattccaccagagcacgcttcgtatg
aagcacggaacatacgacaaactggacgaggatggtattgttgcacctggtgtgcgggtg
tctggagaagacatcattattggcaaaacggcgcctattgaccaagagagccaagatctg
ggaaccagaacgagtgttcatcagagacgtgacatctctacccctctaagaagtacggaa
aatggtatcgtggactcggtcattctcacagtcaatgccgataatgtcaagtatgtcaag
gtccgtgtccgaaccacaaaggtgcctcagattggcgacaagttcgcctctcgccacggt
cagaagggtactattggtgtgacctaccgacaagaggatatgccttttacgcgggagggt
gtgacgccagacatcattatcaacccgcacgccattccttcacgaatgacaattgctcac
ttgatcgagtgcttgctgagtaaggtgtcgacgttggaaggcatggagggtgatgccacg
ccatttactgatgtgacagttgactctgtctcggagctgttgcgcaaacacgggtaccag
tccagaggtttcgaaatcatgtacaatggccatactggcaagaagctgagagcgcaggtg
ttctttggacccacgtattaccagcgacttcgtcacatggtggacgacaagatccacgcg
cgtgctcgtggacctgtgcaaatcatgacgcgacagcctgtggagggtcgtgccagagat
ggtggtctccgattcggagaaatggaacgtgattgcatgattgcccatggtgcagctgcc
ttcttgaaggagcgattattcgaagtgtcagacgctttccgagttcacatttgtgaaatt
tgtggtttgatgacaccgattgcaaacctttcgaagcaatcattcgaatgccgcccctgc
aagaacaagaccaagattgcgcaaatccacattccctacgctgccaagcttctcttccaa
gagctccagtcaatgaacattgcagcaagaatgtttaccgacaggtccggcgcatccatt
cgatga
DBGET
integrated database retrieval system
