KEGG   Pochonia chlamydosporia: VFPPC_05733
Entry
VFPPC_05733       CDS       T09407                                 
Name
(RefSeq) exosomal core protein CSL4
  KO
K07573  exosome complex component CSL4
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VFPPC_05733
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_05733
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     VFPPC_05733
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     VFPPC_05733
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 28848872
NCBI-ProteinID: XP_018141778
UniProt: A0A179FG05
LinkDB
Position
5:1436460..1437143
AA seq 208 aa
MAVEELPSVATPGKVLGPTSKYISGLGTHIHEGNVVSSLLGKVDVTTPAKAPGPAKRLNK
ITAPAPEELPTISVARHGRKREILPDVNNVVLARVVRLMPKQAIVVIQQVGNTVLQTEWQ
GVIRVQDVRATEKDKVKIYESFKPGDIVKAQVISLGDQANYYLSTAANELGVIMATSEAG
NDMVPVSWKEFKDPETGLSELRKVAKPT
NT seq 627 nt   +upstreamnt  +downstreamnt
atggctgtagaagaattaccttccgtcgcaacaccaggaaaggttctcggcccgacctca
aaatacatctctggcctaggcacacatatccacgaggggaacgtcgtgtcctcccttctc
ggcaaagtcgacgtgacaacgcctgccaaggctcccggacctgcgaaacgactaaacaag
attacagctcccgcacccgaagagctcccaaccatttccgtggcgagacacggccgcaaa
cgcgagatcctgcctgacgtgaataatgtcgtcttggcacgtgtggtgcgactgatgccg
aagcaagccattgttgtaattcagcaagtcggcaacaccgttctccagacggaatggcag
ggcgtcattcgcgtacaagacgttagggccacggaaaaggataaagtcaagatttatgaa
tcatttaaacccggcgatattgtcaaagcacaagtgatatctcttggagaccaagcgaat
tactacttgtcgacagcagcgaacgagcttggagttattatggccacgagcgaggctgga
aatgacatggtgcctgtgagctggaaggagtttaaggacccagagacaggattaagcgag
ctgaggaaagtggctaagcctacttga

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