Pochonia chlamydosporia: VFPPC_05872
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Entry
VFPPC_05872 CDS
T09407
Name
(RefSeq) ATP-dependent RNA helicase ded1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_05872
03041 Spliceosome [BR:
pchm03041
]
VFPPC_05872
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_05872
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_05872
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VFPPC_05872
mRNA cycle factors
Common to processing body (P body) and stress granule
VFPPC_05872
Spliceosome [BR:
pchm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VFPPC_05872
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VFPPC_05872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
28848988
NCBI-ProteinID:
XP_018141929
UniProt:
A0A179FG88
LinkDB
All DBs
Position
5:complement(1864248..1866373)
Genome browser
AA seq
679 aa
AA seq
DB search
MAEQLNMGGLSLGDGQQPQRSYIPPHMRNRPGPPPGPPAGPPAGPPPAMNGGAPNGAPNG
LNNSSWAGNNAGPGPGPGYGGRQNNWSNGPEGGAPPSFQNNRRGGWGGRGGGYSGGGHDG
HSGGGYTARGSGDGQWRDGKHVPGPANPRLERELFGATVDDPSKQHTGINFEKYDDIPVE
ASGHDVPEAVLQFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSG
KTGGFLFPILSQAFINGPSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYDEARKFA
YRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEAD
RMLDMGFEPQIRRIVEGEDMPAVADRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGS
TSENITQKVEFVEDIDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSI
HGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGR
TGRAGNTGIATAFFNRGNRGIVRELMELLKEANQEVPAFLEAIARESSYGGGGRGGRSRG
GGGRGTATRDFRKFGGGGGGGGFGGNSGGGFGGPPQSSGYGGGGFGGPQGGYGGGYGGGG
GGGGGGYGNPGGPGAQSWW
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaacttaacatgggtggcctgagccttggtgatggccagcagccccagcgc
tcgtacatcccgcctcacatgcgaaaccgacccggtcctcctcctggtcctcctgctggc
cctcctgctggccctccccctgctatgaatggcggtgctcccaacggcgcccctaatggc
ctcaacaacagctcttgggctggcaacaatgctggccccggtcccggccccggctacggt
ggtcgccagaacaactggagcaacggacccgaaggtggtgctcccccgtctttccagaat
aaccgtcgcggaggttggggcggtcgtggaggtggttactctggcggcggtcacgatggc
cactccggcggtggctacactgcccgaggctctggtgatggccagtggcgcgatggaaag
cacgttcctggaccggctaacccccgtcttgagcgtgagctcttcggtgccacagtcgat
gatccttccaagcagcacacgggcatcaactttgagaaatacgacgacattcccgttgaa
gcctccggtcatgatgttcccgaggctgttcttcagtttaccactcctcctctggatgaa
catctctgccgcaacatcgagctggctcactacaaggtccccacacctgtgcagaagtat
tccatccccattgttatgggcggacgtgatctcatggcttgtgctcagactggttctggc
aagactggtggcttccttttccccattctttctcaggccttcatcaacggcccttcgcct
gtcccggccaacgctgctggccagtttggtcgtcagcgcaaggcctaccctacctctctg
attcttgctcccacccgtgagctggtctctcaaatctatgacgaagctcgcaaatttgcc
taccgatcctgggttcgcccctgcgtcgtgtatggtggcgccgatattggctcccagctt
cgccagattgagcgaggctgtgaccttttggtcgctactcctggtcgtctggtcgatctt
attgagcgtggccgcatctccctctgcaacattaagtatcttgtattggatgaggctgat
cgcatgcttgacatgggtttcgaaccccagattcgccgcatcgtagagggcgaggacatg
cctgccgtggctgaccgtcaaactctcatgttttcggccaccttccctcgcgacatccag
atgcttgccagagatttcctcaaggactacatcttcttgtcagttggccgtgtcggttcc
acctctgagaatattactcagaaggttgagtttgttgaggacattgacaagcgatccgtt
ctcctcgatattctccacactcacgcgggcgggttgacactcattttcgttgagacgaag
cgcatggctgactctctgtcggacttccttatcaaccagagcttccctgccacgtccatt
cacggtgatcgcacccagcgtgagcgtgagcgcgccctcgagttcttccgcaacggtcga
tgccccatcttggttgctactgccgtcgccgctcgtggtcttgatatccccaacgtcact
cacgtcatcaactacgacttgcctaccgatgtcgatgactacgtacaccgaattggtcgt
actggtcgtgcaggaaacactggcattgctactgctttcttcaaccgtggcaaccgtggt
attgtccgtgagctcatggagcttttgaaagaagccaaccaggaggttcccgccttcttg
gaggccatcgctcgcgaatcctcctacggtggaggtggccgtggtggtcgatctcgtgga
ggtggtggtcgcggcactgctacgcgtgacttccgtaagttcggcggcggaggcggaggc
ggaggcttcggcggcaacagtggtggtggttttggtggcccccctcagagctctggctac
ggcggcggcggctttggtggtcctcagggtggttatggtggtggctacggcggcggcggc
ggcggcggcggcggtggttatggcaaccctggcggccctggtgcccagtcttggtggtaa
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