Pochonia chlamydosporia: VFPPC_05920
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Entry
VFPPC_05920 CDS
T09407
Name
(RefSeq) exonuclease Kem1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03008
Ribosome biogenesis in eukaryotes
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VFPPC_05920
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_05920
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_05920
03016 Transfer RNA biogenesis [BR:
pchm03016
]
VFPPC_05920
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_05920
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
VFPPC_05920
mRNA degradation factors
5'-3' decay
5' exonucleases
VFPPC_05920
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
Pre-60S particles
RNases
VFPPC_05920
Transfer RNA biogenesis [BR:
pchm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
VFPPC_05920
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
VFPPC_05920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Cytokin_check_N
DUF2533
Phage_holin_T
Motif
Other DBs
NCBI-GeneID:
28849029
NCBI-ProteinID:
XP_018141990
UniProt:
A0A179FGL4
LinkDB
All DBs
Position
5:2037343..2041856
Genome browser
AA seq
1430 aa
AA seq
DB search
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHKDAGEDVSFRLSEEE
MFIRIFNYIEHLFGKIKPKQLFFMAIDGVAPRAKMNQQRARRFRTALDVEKAREKAIKEG
VEMPKEEPFDSNCITPGTEFMAKLSQQLRYFVNKKVSEDADWQGCEIVLSGHEVPGEGEH
KIMEYIRNAKAQPGYNPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRASKAKSK
ELEHQNFYLLHLCIVREYLEMEFQALHQEGTLSFPFDLERVIDDFILMAFFVGNDFLPNL
PGLHINEGALANMFKIYKTVLPTCDGYINENGVINMPRLDKLLTELSKLELVSFENDISD
EKWFASKQMEKKLEAQNGTRNKNPRTGQLVITSSQRDLWKSKIRPFVSKRSDGTLDLGKD
LKAADRKFVQDIADAMHLDWATKEDGNGDRHLILSFPARPGGGKDEDDDDDEDEEEGNLA
AFRVIKSYDKALVVDVTSDEAQQQYEKLYNDKYAGWKTKYYLQKFPEWAPEKYQNEQTDL
CQNYVQGLQWVLFYYYKGIASWPWFYGYHYAPLISDVAKGLGADLNFKKGQPFKPYEQLM
GVLPDRSKKIVPKVYHDLMTNPNSPIIDFYPRDFELDMNGKKMDWEAVVKIPFIDEKRLL
DAMATKNDLLEDDEKARNGFGVPIKFTYSTDVNFTYPSPLPGIFPEVQNCRCIENIFDLP
DIEGLEYVSGLTTGALVKVEALAGFPTLHTLPYTAQLIEGYGINVFQQESRNPSIVVTLT
DTKQRTSIEAFKAKLGQRCYVGYPFLQEAKIMKVQDELFSYELAENGQDIVAKDHTNRDA
SDFAREAEFLESWHAKRLGVTIGQVECLVHVHMLRGLIKTEEGSLIKEYAENPSVRSVYA
SQTIVDEVVNEDERFIEKEALPIEEEFPLGTRAFFLGEYAYGRPLEVTGHIKGKTEVIVS
RPKNKEPEFSKKIIHQAERTNPYTPSFAVAKQLGVHPLVLSKITSSYQVSTAAGLKLNLG
LNLKFEGRKLKVLGYSRKSHTGWEFSSLAVKLIADYMVAFPDFFAAIQKEPQRNDTCETD
LWNDPAMASQRVKDVVAWLKKQETSKFERVPLEAEQLDSEVVMALAAAGEQVFQSSQDID
IKKLKGVPRAAILKPSDAELVLGNQNFGLGDRVTFVASAGKVPIATRGTVAGISRTATAL
LLDVVWDTSFMSGTTLGERAPMFRGQTVPSSSVLNTSDKQVISASSKSQQKQATSTMSTG
FYGSVGVPQYKDSPAPAPLRGGWRGALNGSGHSTPGRNSPSRGSPGRGRGSPSFGPQRGG
NNNGTAPNLLHSTLVYREGSNAAPPAQATNGTNGTNGRGGGRGRGRGSYQGAPSAQSSAE
QQGKYSNIPPPAALDNNRGGRGRGRGRGRGGPTRARGGNGRGGSASPAES
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaagttctttcgatggctctcggagcgatatcctgccatttcccagctc
atcgctgaaaataggatacccgagttcgattgcctctatcttgatatgaacggtatcatt
cacaactgcacccacaaagacgctggagaagatgtttcatttcgcctcagcgaagaagaa
atgttcatcagaatctttaactacattgagcatttgtttggcaaaataaaacctaagcag
ctcttcttcatggctatcgatggtgttgcaccaagagctaaaatgaatcaacaacgcgct
cgtcgtttccgaactgctctcgatgtcgagaaagctcgcgagaaggccatcaaagaaggt
gttgagatgcccaaggaggaaccgttcgatagcaactgcatcacgccaggaactgaattc
atggcgaagctatcgcaacaactacgttactttgtgaacaaaaaggtatcagaagatgcc
gactggcaaggatgcgaaatcgtcctttctggccacgaggttcctggcgaaggagagcac
aaaatcatggagtatattcgaaacgcgaaggcacagcccggctacaaccccaatgtgcga
cactgcctctacggcttggatgcggacttgatcatgttggggctcctcagccacgacccc
catttctgccttctccgagaggaagtcacattcggaagagcttcgaaagctaaatcgaag
gagcttgagcaccaaaacttttacctccttcacctgtgcattgtccgggaatacctggaa
atggagtttcaggcactgcatcaagaaggaacattgagttttccatttgacctcgaaaga
gttatcgatgacttcattttgatggcattttttgttggaaacgatttcttgcccaatctc
cctggtcttcatatcaatgaaggcgcgctggcaaatatgttcaaaatctacaagacagtg
ctgcctacttgcgacggatacatcaacgagaacggtgttatcaacatgcctcgactggat
aagttgttgacggagctgagcaaactggaactggtgtcgtttgagaatgacatctcagat
gaaaagtggtttgcgtcaaagcagatggaaaagaagcttgaagctcagaacggtacccgc
aacaagaatccaaggacagggcagctcgtcatcacttcgtctcaacgcgatctctggaag
tcgaaaatccgccccttcgtgtccaaacgatctgacggcaccttggatctaggaaaagat
ctcaaggcagctgatcgtaagtttgttcaagacattgctgatgcgatgcacttggactgg
gcgacaaaggaggatgggaacggtgaccgccatcttattttgtcgtttcctgcaagacca
ggtggtggcaaggacgaagacgacgacgacgacgaagatgaagaggaaggaaacctggca
gccttccgtgtcatcaaatcttacgacaaggctttagttgttgacgtgacatcagatgag
gcacaacagcagtatgagaagctctacaatgacaagtatgctggttggaagacaaagtac
tacttgcaaaagttccccgagtgggcccccgagaaataccagaacgagcagaccgatttg
tgtcaaaactatgttcagggtctgcaatgggtgcttttctactactacaagggtattgcg
tcatggccatggttctatggttatcattatgcgcctctaatttctgatgttgccaagggt
cttggtgccgacctcaactttaaaaagggccagcctttcaaaccttatgaacagcttatg
ggtgttttgccagaccgaagtaagaagattgtaccaaaagtgtatcacgacctcatgacg
aacccaaactcgccaattattgacttctatcctcgcgatttcgagctggatatgaatggt
aagaagatggactgggaagctgtggtgaagatccccttcatcgacgagaaacgactgctt
gacgccatggccaccaaaaacgacttgctggaggatgatgaaaaggcacgcaatggattt
ggtgttccgatcaagtttacatactccacagacgtcaactttacgtacccctctcctctc
cctggaatatttcccgaagttcaaaactgccgctgcattgagaatatttttgatctgcct
gatatcgaaggcttggaatatgtttcgggtctaacaaccggagccttggtgaaggttgaa
gctttggctggatttccgacactgcacacactgccctacactgcccagctcattgaaggc
tacggcatcaatgtctttcagcaggagagcagaaacccaagtattgtcgtgacgctgact
gatacaaaacaacgcacgagtatcgaggctttcaaggctaagcttggtcagcgatgctat
gttggctaccctttcctccaggaagctaagataatgaaggtgcaagatgagctcttttca
tacgaacttgctgaaaatggccaagatattgtcgccaaggatcacacaaacagggacgct
tcagactttgccagggaagctgaatttttggagagttggcacgcaaagcgtttgggcgta
accattggacaagtggaatgtttagttcatgttcacatgctcaggggcctcatcaaaacg
gaagagggttcgctgatcaaggaatatgccgaaaaccctagcgttcgcagcgtttatgca
tctcagaccattgtcgacgaggtcgtcaacgaagacgaacgattcattgagaaagaagct
cttcccatcgaagaagagttccccttgggtacaagagcatttttccttggggagtatgcc
tacggtcgtccgctggaggttactggacatattaagggcaagacagaagtcatcgtttcc
agacccaagaataaggagcccgagttttcgaagaagattatacaccaagctgaacgtacc
aatccgtacaccccgtcctttgccgtggcaaaacaattgggagttcacccattggttctg
agcaagatcacatcatcctatcaggttagcaccgctgcgggattgaagctgaacctgggc
ctgaacctcaaatttgagggtcgtaaactcaaagtgctgggctattcacgaaagtcacac
actggatgggagtttagttctctggctgtgaagcttattgctgactacatggtcgcgttt
cccgacttctttgccgccatccaaaaagagccgcagagaaacgacacgtgtgaaacggac
ctttggaacgatcctgcaatggcttctcagcgcgtcaaggacgttgttgcttggctgaag
aagcaggagacgagcaagtttgagcgagtgcctcttgaggcagagcagctcgattcggaa
gttgtcatggcattggctgcggctggcgagcaagtgttccaatcctctcaggatatcgac
atcaagaagctgaagggcgtgccacgtgcggcgattttgaaaccatccgatgcagagttg
gtgctgggtaaccaaaactttggtctgggtgatcgtgtgacatttgttgcttctgcagga
aaggtcccgattgctactcgaggaacagttgcgggtatcagtagaactgccacggctttg
ctcctcgatgttgtatgggacacatcattcatgagtggtacgactttgggcgaacgagct
cctatgttccgtggtcagacggtaccatcctcgtccgttctgaacacgtctgacaagcaa
gttatctctgcgtcgagcaagtcgcagcagaaacaggccacgtccaccatgtcgacaggc
ttttacggatctgttggcgttccccaatacaaggactcaccagcccccgctcctttacgt
ggcggctggcgcggtgctcttaatggtagtggccatagcactcctggccgcaattctcct
agcagaggctcgcctggtcgaggccgtggcagccccagctttggcccgcaacgtggtggc
aacaacaacggcaccgcaccaaacttacttcatagcacgctggtgtatcgtgaaggctcc
aatgctgcacctcctgcacaagctaccaatggcaccaatggcaccaatggccgtggtggc
ggtcgtggcagaggtcgtggcagctaccaaggagcacctagtgcacagtctagcgcggag
cagcaaggtaaatacagcaatattccacctccggctgctctggacaacaaccgcggagga
cgaggtcgtggccgtgggagaggtcgcggtgggcctaccagggcaagaggaggtaatggc
aggggaggaagtgcttccccggccgagagctaa
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