Pochonia chlamydosporia: VFPPC_06734
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Entry
VFPPC_06734 CDS
T09407
Name
(RefSeq) PABP-dependent poly(A) nuclease 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_06734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_06734
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VFPPC_06734
mRNA degradation factors
3'-5' decay
Pan complex
VFPPC_06734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
zf-CCCH
DUF6415
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
28849715
NCBI-ProteinID:
XP_018138499
UniProt:
A0A179F5K5
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MAASRFAASDLRRPAGSSPKPKGRAENKDTLCRNVLIYGHCRYEDQGCTFSHDQNKNSSN
QADMSRRALNVESPSFTPANLQSVSKKPTFSTQAANAPTFTPRGLGASPALSATPADPEA
AIFNPAAIREFTPSFELNSQGVSNGSNQDGSVNYDAFAMASVGQSLPGVQFNPYVDEQGG
MPGAAGGFYQPTAAYNAPLQPLQHHLYAPVGPYREDLMPYHRLTHDFFLPDKIREDLQKK
AEASLQVMPNSQLPQMENYHSLVPLDTNHRNNANIFSYPSWIYKATASKTGNLYCLRRLE
GFRLTNEHAIRSVKEWRKIDNANVVTIHDAFTARAFGDSSLIFVQDYHPLAKTLAEVHLA
QLVSPAPAPGGRFPAKSPISEAVLWGYISQIANALKSIHSINLAARCIDVTKIILTDKNR
IRLNACSILDVVQFEMRRPMQELQQDDFMQFGRTILSLATSTPPAQLANVNASIEQMARS
YSVELRDTVIWLLTPAQPPSQKTIEEFIRGIAGHIVTTLDQAQHHADDLNSELFRELENG
RIARLLLKLGAINERQEFDGDRTWSENGERYMLKLFRDYVFHQVDSNGNPVLDMGHMLRC
LNKLDAGTEERICLTSRDEQTSFIVSYKELRKQLGNAFGELQKTSKQGRGF
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcgcgattcgcagcctccgatcttaggcgcccagctggttcgtcgccgaaa
ccaaagggacgcgcggagaacaaggacacgctctgtcgaaacgtcttaatttatggacac
tgccgatacgaagaccaaggttgcaccttttcccacgaccaaaacaagaatagctcaaac
caagcagacatgtctcgaagagccctgaatgtcgagtctccttcatttactcccgcaaac
ctgcaatctgtcagcaaaaaaccaacattttctacacaagccgccaatgcgccgacattc
actccgagggggctaggcgcatcgccagctctctcagcaactcctgctgatccagaagct
gccatatttaacccagccgccattcgcgaattcactcccagttttgagttgaattcacag
ggtgtgtcgaatggatcgaatcaagatggctccgtgaactatgatgcgtttgcaatggcg
tcagttggtcaaagcctccccggcgtacagttcaatccctacgtggatgaacaaggaggc
atgcctggcgccgctggaggattttatcaaccaactgccgcgtataatgcccctctccag
cccctgcagcatcacctgtatgcgccggttggaccctacagagaggacctgatgccctat
catagattgacacacgactttttcctgcccgacaaaatacgggaagaccttcaaaagaag
gcagaggcctcactccaggtcatgcctaactcacaactgcctcagatggaaaactaccac
tcgctggtacccctcgacaccaaccaccgaaataacgctaatatcttctcctaccccagc
tggatttacaaggcgacagcttccaagacaggcaatctttattgtctgcggcggttggag
ggattcaggctcacaaacgaacacgccatccgatccgtcaaggaatggagaaagattgac
aatgcaaacgttgtgacgatacacgatgcatttacagcccgtgcctttggggacagctct
ctcatatttgtccaagattatcaccccttggccaaaacccttgctgaagttcaccttgct
caacttgtttccccagccccggcacctggaggccgctttccagcaaaatccccaatttcg
gaagctgtcttatggggctacatctcccaaatcgcaaacgccttgaaatccattcattcc
attaacctagctgcccggtgtatcgacgtcaccaagatcatacttactgataaaaatcgc
atacgcctaaacgcctgctctattctcgatgtggtccaatttgaaatgcgccgccccatg
caggaactccaacaagacgacttcatgcaatttggccgcaccatcctctctctagcaacc
agcacacctcctgcccaactcgccaatgtcaatgcctccattgaacaaatggcccgctcg
tactccgtagagcttcgcgacacagtcatatggctcctcacgcctgcgcagccaccttct
caaaagacgattgaagaatttattcgcggtattgcaggccacatcgtcaccaccctcgac
caagcccaacaccacgccgacgaccttaattctgaattgttccgcgaactagaaaacggc
cgcatcgctcggctcctcctcaagctaggcgccatcaatgaacgccaggaatttgatgga
gaccggacgtggtctgaaaacggagagcggtatatgctcaaactgttcagggactacgtc
ttccaccaagttgatagtaacgggaatcccgtccttgacatgggtcacatgcttcgttgc
ctgaacaaattagatgcaggcaccgaggagagaatctgtcttaccagccgtgatgaacag
actagcttcattgtcagctataaggagctgaggaagcagctgggaaatgcgtttggcgag
cttcaaaagactagtaagcagggcagggggttctag
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