KEGG   Pochonia chlamydosporia: VFPPC_06734
Entry
VFPPC_06734       CDS       T09407                                 
Name
(RefSeq) PABP-dependent poly(A) nuclease 3
  KO
K12572  PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VFPPC_06734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_06734
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VFPPC_06734
  mRNA degradation factors
   3'-5' decay
    Pan complex
     VFPPC_06734
SSDB
Motif
Pfam: Pan3_PK Pkinase zf-CCCH DUF6415 zf-CCCH_4
Other DBs
NCBI-GeneID: 28849715
NCBI-ProteinID: XP_018138499
UniProt: A0A179F5K5
LinkDB
Position
Unknown
AA seq 651 aa
MAASRFAASDLRRPAGSSPKPKGRAENKDTLCRNVLIYGHCRYEDQGCTFSHDQNKNSSN
QADMSRRALNVESPSFTPANLQSVSKKPTFSTQAANAPTFTPRGLGASPALSATPADPEA
AIFNPAAIREFTPSFELNSQGVSNGSNQDGSVNYDAFAMASVGQSLPGVQFNPYVDEQGG
MPGAAGGFYQPTAAYNAPLQPLQHHLYAPVGPYREDLMPYHRLTHDFFLPDKIREDLQKK
AEASLQVMPNSQLPQMENYHSLVPLDTNHRNNANIFSYPSWIYKATASKTGNLYCLRRLE
GFRLTNEHAIRSVKEWRKIDNANVVTIHDAFTARAFGDSSLIFVQDYHPLAKTLAEVHLA
QLVSPAPAPGGRFPAKSPISEAVLWGYISQIANALKSIHSINLAARCIDVTKIILTDKNR
IRLNACSILDVVQFEMRRPMQELQQDDFMQFGRTILSLATSTPPAQLANVNASIEQMARS
YSVELRDTVIWLLTPAQPPSQKTIEEFIRGIAGHIVTTLDQAQHHADDLNSELFRELENG
RIARLLLKLGAINERQEFDGDRTWSENGERYMLKLFRDYVFHQVDSNGNPVLDMGHMLRC
LNKLDAGTEERICLTSRDEQTSFIVSYKELRKQLGNAFGELQKTSKQGRGF
NT seq 1956 nt   +upstreamnt  +downstreamnt
atggcggcgtcgcgattcgcagcctccgatcttaggcgcccagctggttcgtcgccgaaa
ccaaagggacgcgcggagaacaaggacacgctctgtcgaaacgtcttaatttatggacac
tgccgatacgaagaccaaggttgcaccttttcccacgaccaaaacaagaatagctcaaac
caagcagacatgtctcgaagagccctgaatgtcgagtctccttcatttactcccgcaaac
ctgcaatctgtcagcaaaaaaccaacattttctacacaagccgccaatgcgccgacattc
actccgagggggctaggcgcatcgccagctctctcagcaactcctgctgatccagaagct
gccatatttaacccagccgccattcgcgaattcactcccagttttgagttgaattcacag
ggtgtgtcgaatggatcgaatcaagatggctccgtgaactatgatgcgtttgcaatggcg
tcagttggtcaaagcctccccggcgtacagttcaatccctacgtggatgaacaaggaggc
atgcctggcgccgctggaggattttatcaaccaactgccgcgtataatgcccctctccag
cccctgcagcatcacctgtatgcgccggttggaccctacagagaggacctgatgccctat
catagattgacacacgactttttcctgcccgacaaaatacgggaagaccttcaaaagaag
gcagaggcctcactccaggtcatgcctaactcacaactgcctcagatggaaaactaccac
tcgctggtacccctcgacaccaaccaccgaaataacgctaatatcttctcctaccccagc
tggatttacaaggcgacagcttccaagacaggcaatctttattgtctgcggcggttggag
ggattcaggctcacaaacgaacacgccatccgatccgtcaaggaatggagaaagattgac
aatgcaaacgttgtgacgatacacgatgcatttacagcccgtgcctttggggacagctct
ctcatatttgtccaagattatcaccccttggccaaaacccttgctgaagttcaccttgct
caacttgtttccccagccccggcacctggaggccgctttccagcaaaatccccaatttcg
gaagctgtcttatggggctacatctcccaaatcgcaaacgccttgaaatccattcattcc
attaacctagctgcccggtgtatcgacgtcaccaagatcatacttactgataaaaatcgc
atacgcctaaacgcctgctctattctcgatgtggtccaatttgaaatgcgccgccccatg
caggaactccaacaagacgacttcatgcaatttggccgcaccatcctctctctagcaacc
agcacacctcctgcccaactcgccaatgtcaatgcctccattgaacaaatggcccgctcg
tactccgtagagcttcgcgacacagtcatatggctcctcacgcctgcgcagccaccttct
caaaagacgattgaagaatttattcgcggtattgcaggccacatcgtcaccaccctcgac
caagcccaacaccacgccgacgaccttaattctgaattgttccgcgaactagaaaacggc
cgcatcgctcggctcctcctcaagctaggcgccatcaatgaacgccaggaatttgatgga
gaccggacgtggtctgaaaacggagagcggtatatgctcaaactgttcagggactacgtc
ttccaccaagttgatagtaacgggaatcccgtccttgacatgggtcacatgcttcgttgc
ctgaacaaattagatgcaggcaccgaggagagaatctgtcttaccagccgtgatgaacag
actagcttcattgtcagctataaggagctgaggaagcagctgggaaatgcgtttggcgag
cttcaaaagactagtaagcagggcagggggttctag

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