Pochonia chlamydosporia: VFPPC_07032
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Entry
VFPPC_07032 CDS
T09407
Name
(RefSeq) pre-mRNA processing splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_07032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_07032
Spliceosome [BR:
pchm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VFPPC_07032
Complex C
U5 SnRNP specific factors
VFPPC_07032
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
Motif
Other DBs
NCBI-GeneID:
28849957
NCBI-ProteinID:
XP_018140035
UniProt:
A0A179FAL7
LinkDB
All DBs
Position
7:complement(<482637..>489761)
Genome browser
AA seq
2374 aa
AA seq
DB search
MSGIPPPPPPGWGAAPPPPPPPPPSSLPPPPDTPAPPAPPPPGYHPPSDPQIAKFAQKKK
EWLRDRRNRFGEKRKAGFVQTQKADMPPEHLRKIVKDIGDVSQKKYTNDKRSYLGALKFM
PHAVLKLLENMPMPWESAREVKVLYHVNGCLTLVNETPRVIEPVFFAQWAMMWTFMRKEK
ADRRLFKRMRFPPFDDEEPPLSWSENIEDVEPLEPIQMELNEEEDEAVYEWFYDHRALLD
TSHVNGPSYKTWNLTLPQMATLFRLSRPLISDVVDKNYFYLFDLKSFLTAKALNVALPGG
PRFEPLYKDIDPNEEDFGEFNAIDRIIFRTPIRTEFRVAFPFLYNSLPRSVHLTWHSHPQ
IVFNRADDPDLPTFLFDRRINPISSRTVAPKNVEVTLEDELFGPGSNEEPEEDAFELPAA
VEPFLADEELENEHTSSAIDLWWAPFPFDRRSGKMVRAQDVPLVKQWYLEHPPSDRPPVK
VRVSYQKLLKNFVLNELHKKKPNAHNNQNLLRSLKQTKFFQQTTIDWVEAGLQVCRQGFN
MLNLLIHRKNLTYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQV
QYRLGNIDAFQLADGIHYAFNHVGQLTGMYRYKYKLMHQIRTCKDLKHLIYYRFNSGPVG
KGPGCGFWGPSWRVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFD
LELRQSVMSDLMDMMPEGIKQNKVSVVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRY
VKSKADWWISVAHYNRERIRRGATVDKTVAKKNVGRLTRLWLKAEQERQHNHMKDGPYVS
SEEGVAIYTTTVHWLESRKFSPIPFPSVSYKHDTKILILALERLREAYSVKGRLNQSQRE
ELALIEQAYDSPGTTLERIKRFLLTQRAFKEVNIDMNDNYNTINPVYDIEPIEKISDAYL
DQYLWYQADQRHLFPAWIKPSDSEVPPLLVYKWAQGINNLSQVWETEDGECNVMVETELS
KVYEKMELTLLNTLLRLIMDHNLADYITAKNNVQLTYKDMNHVNSYGMIRGLQFSAFVFQ
FYGLVLDLLLLGPQRASEIAGPPQSPNDFLQFRDRETETRHPIRLYSRYIDKIWVFLRFT
AEESRDLIQRFLTEQPDPNFENVIGYKSKKCWPRDSRMRLMRHDVNLGRAVFWDLKNRLP
RSVTTIDWDDSFVSVYSRDNPNLLFSMCGFEVRILPKIRNQNDEFPVKDSVWSLVDNTSK
ERTAHAFLQVTQEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIALFTYYREAAVSTV
ELLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMISGSHILIPASDKRW
SKQTDTGVTHYRSGMTHDEETLIPNIFRYIIPWEAEFIDSQRVWTEYSQKRLEANQQNRR
LTLEDLEDSWDRGLPRINTLFQKDRSTLSFDKGFRARSEFKIYQLMKSNPFWWTSQRHDG
KLWNLNAYRTDVIQALGGVETILEHTLFKATGFPSWEGLFWEKASGFEESMKFKKLTNAQ
RSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFLHGKIPTLKISLIQIFRAHLW
QKIHESVVMDLCQVFDQELESLGIETVQKETIHPRKSYKMNSSCADILLFASHKWNVTRP
SVLFDTKDVIEPTTTNKFWIDVQLRYGDYDSHDIERYTRAKYLDYTTDSSSIYPSATGLM
IGIDLAYNLYSAYGMYFPGLKVLIQQAMAKIMKANPALYVLRERIRKGLQLYASESNQEF
LNSQNYSELFSNQTQLFIDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKII
HTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQLIVTRKGLLDPLEVQLVDFPNI
SIRASELQLPFQAAMKVEKLGDMILRATEPQMVLFNLYDEWLKSISSYTAFSRLVLILRA
LHVNPDKTKLILRPDKTVITHEHHIWPSLSDEEWIKIETQLRDLILNDYGKKNNVNVSSL
TSSEVRDIILGMEISAPSLQRQQAAEIEKQQQEQQQLTAVTTKTQNVHGEDIIVTTTSQF
EQQTFASKTEWRTRAIATSNLRTRAKNIYVSSVDNDLDDVTYVMPNNILKRFITIADLRV
QVAGYLYGASPPDNDQVKEVKCIVMMPQIGGLRNVQLPQQLPRSEFLDGMEPLGIIHTMS
GSELPYMSAADVTEHAKLLDAHSEWDKTNTVTVSVSFTPGSVSLSAWGLTPHGYKWGAEN
KDTQSDQPQGFTTTMGEKRKLLLSPRFRGFFLVPDDGRWNYSFMGSAFAGMEKKPVHVKL
DTPLPFYNDQHRPIHFHSFAELEDIWVDRTDNFE
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcattcctccaccgccgcccccaggatggggagctgctcctcctcctcctcca
ccacctcctccatcatcactgccgccacctcccgatacacctgcgccgccagcgcctccc
ccccctggataccacccgccgtccgatccccagatcgcgaagtttgcacagaagaagaaa
gaatggcttcgagatcggcgaaacagattcggagagaagcgaaaggcgggctttgtccag
acccaaaaggctgacatgccacctgagcatcttcgcaagatcgtcaaggacatcggagat
gtgtcccaaaagaagtacaccaacgacaagcgcagctacctgggtgctttgaaattcatg
ccacacgcagtgctgaagctgctcgaaaacatgccaatgccctgggaatcagcgcgcgag
gtcaaggttctgtaccatgtcaacgggtgcttgactttggtcaacgagacaccgcgtgtc
atcgagcctgtcttctttgcgcaatgggcaatgatgtggacatttatgagaaaggaaaag
gctgacagaaggcttttcaagcgtatgcgattcccaccctttgacgacgaggaaccgcct
ctgtcatggtccgagaacatcgaggatgtggaacctttggaacccatccaaatggagctg
aatgaggaggaagatgaggccgtttacgagtggttctacgaccaccgagcacttcttgat
acctcgcacgtcaatggcccgagctacaaaacatggaatctcactcttccccaaatggct
actttgttccgactcagtcggccgttgatttccgacgttgttgataagaactacttttac
cttttcgatctcaagagcttcctgactgcaaaggctctcaacgtcgcacttcctggtggc
ccgcgtttcgaaccgctttataaggatattgaccccaacgaggaggacttcggcgagttc
aacgccattgatcgtatcattttccgcaccccgattcgaaccgaattccgagtcgcattt
cccttcctgtacaattctctaccaagaagcgtgcatctgacgtggcactcgcaccctcag
attgtcttcaaccgtgctgacgaccctgatctgcccacgtttcttttcgaccgacgaatt
aaccccatctcgtcccgcacggtcgctccgaagaatgtggaagttacacttgaagatgaa
ctcttcggaccaggaagcaacgaagagcctgaagaagacgcctttgaattgcctgctgcg
gttgagcccttccttgctgatgaggaactcgaaaacgagcacacgtcgtcagcaatcgac
ttgtggtgggctcccttcccattcgatagacgctctggcaagatggttcgcgcccaggat
gtgccactggttaagcagtggtatttggagcatcctccctccgacagaccacccgtgaag
gttcgagtttcgtaccagaagttgctgaagaacttcgtcctcaacgagcttcacaagaag
aagccgaacgcgcacaacaatcaaaacctgttgcgctctctcaagcaaacgaagttcttc
caacagacaaccatcgattgggttgaagctggtcttcaagtctgccgacaaggtttcaac
atgttgaacttgcttattcaccgaaagaacttgacatatcttcatctggactacaacttt
aacctaaagcctgtcaagacactcaccaccaaggagcgaaagaaatctcgattcggaaac
gcattccaccttatgcgtgagatcctgagattaacaaagcttattgtggatgcccaagtt
cagtatcgtctcggcaatattgatgccttccagcttgcggatggtatccattacgccttc
aaccacgttggacagctcactggaatgtaccgatacaaatataagcttatgcatcagatt
cgtacttgcaaggatttgaagcacttgatctattatcggttcaattctggtccggtcggc
aaaggcccaggttgtggtttctggggcccgtcctggagagtatggctctttttcatgaga
ggcatcatccccctactggagagatggcttggtaacctcttgtctcgtcaatttgaaggc
cgacacagtaaaggcgttgcaaagacggtcaccaagcaacgtgtcgagtcgcattttgat
cttgaattgcgccagtccgtcatgtctgatcttatggacatgatgccagaaggcatcaag
cagaacaaggtcagcgttgtgcttcagcatttgtctgaagcttggcgctgctggaagagt
aacattccttggaaggtccctggtttgcctgcaccaattgagaacatcattcttcgatat
gtgaagtcaaaagcagactggtggatctctgtagctcactacaaccgtgagagaattcgt
cgtggagcaactgtggacaagacagtcgcgaagaaaaacgttggtcgtctgacccgactg
tggctcaaggctgagcaggaacgacaacacaaccacatgaaagacggtccttatgtgtcg
tctgaggaaggtgtagctatttacacaaccactgtccactggttggaatcgcgaaagttt
tctccaatcccattcccgagcgtttcatacaagcatgacaccaagattctgatcctggct
ttggaacgtttgagagaggcatattcagtgaagggccgactgaatcagagtcaacgtgaa
gagcttgcgttgattgagcaagcctatgacagccctggcacaacattggaaagaatcaag
cgattcctgctcacccaacgagccttcaaggaggtcaatattgacatgaacgacaactac
aacaccatcaaccccgtgtacgatatcgagccaatcgagaaaatcagcgatgcctatctt
gatcagtatttgtggtatcaagcagaccagcgacacctcttccctgcttggatcaagcct
tcagactccgaagtgccaccattgttggtttacaagtgggctcagggcatcaacaatttg
agccaagtttgggagacggaagatggcgagtgcaacgtcatggtggaaacggaactttcc
aaggtctacgaaaagatggagcttacactcctcaacactctcctgagacttatcatggac
cacaacttggcggattacatcactgccaagaacaatgttcagctgacgtacaaggacatg
aaccatgtcaacagctacggtatgattcgtggtcttcagttctcagccttcgtgttccag
ttctacggtcttgttttggatcttcttctactggggcctcaacgagccagcgagattgct
ggccctcctcagagtcccaatgattttttgcagttccgggatcgggagacagaaaccagg
caccctatcaggctctacagccgttatattgacaagatttgggtctttttgcgatttacg
gccgaggagtcgagggatcttatccagcgtttccttactgagcagcctgatcctaacttc
gaaaacgttattggctacaagagtaaaaagtgctggccaagggactctcgtatgcgcctg
atgagacacgatgtgaacttgggacgcgccgtattttgggacttgaagaaccgcctgcca
cgatccgttacaacgattgactgggacgacagcttcgtcagcgtgtacagccgcgacaac
ccgaacctgctcttctcaatgtgcggatttgaggttcgaattctccccaagatccgaaac
caaaacgatgagttcccggtgaaggacagcgtctggtctctggtcgacaacacgagcaag
gagagaactgcacatgctttcttgcaggtcacccaagaggacattcaaaagttcaataat
cgtatccggcaaattctcatgtcatctggttcgacaacctttaccaagattgccaacaag
tggaacactgctctgattgctcttttcacctactatcgtgaagcagcagtttctactgtt
gaacttctcgataccattgtcaaatgtgagacgaagattcagacccgtgtcaagatcggc
ttgaactcgaagatgccgtcccgtttcccacctgcagttttctacacacccaaggaactt
ggcggcctgggcatgatttcaggatcgcacatcctgattcctgccagtgacaagcgatgg
tccaagcaaacagacactggcgtcacgcattaccgctctggtatgacacatgatgaggaa
accttgattcccaacattttccgttacatcatcccctgggaggctgaatttattgattcc
cagcgtgtctggactgagtactcgcagaagcgactcgaggccaatcagcagaatcgtcgc
ttgacgctggaagatctcgaagatagttgggatcgcgggttgcccagaatcaacaccctc
ttccaaaaggaccgcagcacactcagctttgacaaaggtttccgagctagatctgaattc
aagatttatcaattgatgaaatccaatcctttttggtggactagtcagcgacacgacgga
aaattgtggaacctcaatgcgtatcgcaccgacgtgatccaggcacttggtggtgttgag
accattttggagcacacccttttcaaagcaacaggatttccttcatgggaaggactcttt
tgggaaaaggctagcggctttgaagaatcgatgaaatttaaaaagctcacgaatgcgcaa
aggtccggtctcaatcagattccgaatcgtcgatttacgttgtggtggtcgcccaccatc
aaccgcgcaaacgtgtacgtcggtttccaggtgcaactggatctgacaggtattttcttg
cacggaaaaatccctactcttaaaatttcgcttattcaaattttccgggctcatttgtgg
caaaagattcatgagtctgttgtcatggatctttgccaggtgtttgaccaagagctggag
tcccttggaatcgagacagtgcagaaggagacaatccatccccgaaaatcatacaagatg
aacagctcctgtgcagacattctcctctttgcaagtcacaagtggaacgtcacccgcccg
tctgtgctgttcgacaccaaggatgtcatcgagccaaccaccacaaacaagttctggatt
gacgtacagctccgctatggtgactacgattcgcacgacattgagagatatactcgcgcc
aaataccttgattacactaccgacagttcgagcatttacccctcagcgacaggtttgatg
attggtattgatcttgcctacaacctgtactcagcgtatggtatgtacttcccaggcttg
aaggtcctcattcagcaagccatggcgaagatcatgaaggccaatcctgctctctatgtt
ctgcgcgaacgtattcgaaagggtctgcagctgtacgcctctgagagcaaccaagaattc
ctgaactcgcagaactactcagagctgtttagcaaccagactcagctattcattgacgac
accaacgtctaccgtgtgacaattcacaagacgttcgaaggcaacttgaccacgaagcca
atcaatggtgctatcttcattttcaaccctcgaactggacagttgttcttgaagatcatt
cacacgagtgtctgggctggacagaaacgtcttggacagctggccaagtggaagactgct
gaagaagttgcggctttgattaggtcacttcctgtggaagaacagccaaaacagcttatc
gttacaagaaagggtttgttggaccctctcgaagtccaattggttgatttccccaatatc
tccattcgagcatctgagttgcaacttcctttccaggccgccatgaaggtggagaagctg
ggagacatgattttgagagctactgagcctcaaatggtattgttcaacctgtatgacgag
tggctgaagagtatctcatcctacactgcattctcacgtctggtcctgattcttcgtgct
cttcatgtcaacccggacaagaccaaactcattctccgaccggacaagactgtcattact
catgagcaccacatctggccgtccttgtctgacgaagaatggatcaagattgaaacacag
ctacgagatctcatcctgaacgactatggcaaaaagaacaacgtcaacgtctcaagcttg
accagcagtgaagtccgtgacatcatcctgggtatggagatttctgctccttctctgcag
aggcaacaggcagcagaaattgagaagcagcagcaagagcagcagcagctcactgctgtc
acgaccaagacgcagaacgtgcacggtgaggacatcattgtcacgactacgtcacagttt
gaacagcagacctttgcttccaagacagaatggcgtacaagagccattgcgacatccaac
ttgcgaaccagagccaagaacatctatgtgtcctcggtcgacaatgacctggacgacgtt
acctacgtcatgccaaacaacatcctgaagaggttcatcacgattgcggatctcagggtt
caggtggccggatacctgtatggtgcctcccctcccgacaacgaccaagtcaaggaggtc
aagtgcatcgtcatgatgccgcaaattggtggtttacgcaacgttcaacttcctcagcag
cttcctcgcagtgagttcctggacggcatggagccacttggtatcattcacaccatgtca
ggcagtgagttgccgtacatgtctgccgctgatgtaactgagcacgccaagcttctcgac
gcccacagcgagtgggacaagacaaacactgtaaccgtctccgtgtcattcacgcccggt
agcgtctctctttcagcatggggcctcacacctcatggatacaaatggggagccgagaac
aaggacacgcaaagtgaccagccgcagggattcacaacgaccatgggagagaagcgaaaa
ctgctcttgtctccgagattcaggggtttcttcctcgtacccgacgatggaagatggaac
tacagcttcatgggcagtgcatttgcaggcatggaaaagaagcccgttcatgtgaagctc
gacaccccccttccattctacaacgatcagcaccgccctattcactttcacagttttgcc
gagctggaagacatctgggtggaccgaaccgacaacttcgaatag
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