Pochonia chlamydosporia: VFPPC_07096
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Entry
VFPPC_07096 CDS
T09407
Name
(RefSeq) 3' exoribonuclease
KO
K12587
exosome complex component MTR3
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_07096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_07096
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VFPPC_07096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
28850007
NCBI-ProteinID:
XP_018139962
UniProt:
A0A179F9Z2
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All DBs
Position
7:700907..701822
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AA seq
284 aa
AA seq
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MSDRRRINGPGGPTNPPIYDEDLSLSPVRNRNDSDARPFYLKTGVTPSASGSAYFEIGQS
TGTHGFGMKFTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRYRRGYLRDASERDLSI
HLEAALRGAVIVDRWPKSGVDVVVTVVEGDMSRQATIDQGLEDWNTMFVLSGCITVAAAA
IADAGIDCVDVVAGGVAALVVNRGNPDEQAIVMDPVVSEHDTVLAACCVAYLPTRNEITN
LWYKGSFYTSELTSYQSLVSNAVLASKATGKTMLMSLNEAIPSV
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccggcgacgaattaatgggccaggcggtccaaccaaccctcctatttacgat
gaggatctatctctctcgccagttcgcaatagaaacgatagcgatgctcgaccattttac
ctaaaaacaggcgtaacgccatctgcatcgggctcagcctacttcgaaatcggccaaagc
acaggaacgcacggctttggtatgaaattcacctgcacggtacatggacctcggtctctt
ccacgatcagcgccgttctctcctcacatggtactatccactcatgttaagtatgcgccg
tttgccactcgctatcgcagaggctatctcagagatgccagtgagcgtgatctgagtata
catctagaagctgccctgcgcggggccgtcattgtcgatcgctggccgaagagtggtgtt
gacgttgtcgtcacggtagtggagggcgacatgagtcgccaagcaaccatcgatcaaggc
cttgaggactggaacaccatgtttgtactgagtggatgcattactgtcgccgctgcagca
attgctgacgctggaatcgattgtgttgatgtcgttgcaggcggtgtagcagcactcgtt
gtgaacagaggaaatccagatgagcaagcaatagtcatggaccctgttgtctccgaacat
gataccgttctagccgcttgctgtgtggcatatttgcccactcgaaacgaaattaccaac
ctttggtacaaagggtcgttttatacttctgagctcacctcataccaatctctggtgtcg
aacgcagtccttgcaagtaaggcaacaggaaaaacaatgttaatgtctcttaatgaggca
attccatcggtttga
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