Pochonia chlamydosporia: VFPPC_07306
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Entry
VFPPC_07306 CDS
T09407
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VFPPC_07306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_07306
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VFPPC_07306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SCAP
WDR90_beta-prop_4th
KNTC1_N
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_DCAF4
Beta-prop_NWD2_C
CPSF_A
Motif
Other DBs
NCBI-GeneID:
28850182
NCBI-ProteinID:
XP_018139704
UniProt:
A0A179F9I8
LinkDB
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Position
7:complement(1414321..1415910)
Genome browser
AA seq
529 aa
AA seq
DB search
MAAAQVGPLPQLKLPSGPSPITAEQRYWKTFKNQLLIPSPTSYPVTHISYNSDSFVVTTG
TRVQIYSNRTRKLVKTITRFGDVARSGDIRKDGKVLVAGDDTGKMQVFDVNSRAILKTWT
EHKQPVWTTKFSPTELTTLLSASDDRTVRLWDLPSNEATTTFVGHGDYVRCANFMPGTMS
NMVVSGSYDSMVKLWDPRTGNNSAVMTFKHAAPVEDVLSLPSGTTVLAAAENSVSVLDLV
AARPLHMITNHQKTVTSLSLASNGRRLVTGGLEGHVKVFETTGWNVVNSVKYQSPILSLQ
VIPSGDGSDASDRHLAVGMQSGVLSVKTRLTGTEANREREREKEMAALIAGTISSHDAKK
SKRKRRIEAANKLDMVGEGADVVIANEPRVHRKKERPWQKDLRHARYARALDQVIDRKSP
DYAPLNVLALLLALRHRSAVRDALENRDEQSVEPVLHWVCGHICDPRYVSVCVEVGLHLI
DMYVEYVSGSAELAESFRVLHRRVKTEVERAQVACQTGGMLESLMMGAM
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctcaggtgggacctctcccacagctcaagttgccatctggcccttcgccg
ataaccgccgagcagcgatactggaaaacgtttaaaaaccaactgttgatcccgtcaccc
accagctaccccgtcacgcacatctcgtacaacagcgactccttcgtcgtaacgactggt
acccgcgtccaaatctactccaaccgcactcgcaagctcgtcaagaccattaccagattc
ggggatgtggctagaagcggagacattcgcaaggacggcaaggtccttgttgccggcgac
gacacgggcaaaatgcaagtgtttgacgtgaattcacgagcgattctcaagacgtggacg
gagcacaagcagcctgtctggacgacgaaattcagccctacggaattgacgacgctgctt
agcgccagtgacgacaggacggtgcggctttgggatctgcccagcaatgaggcgacgacg
acgtttgtcggacacggcgactatgtgcgctgtgcgaatttcatgccggggactatgtcg
aacatggttgtctcgggaagttatgactccatggtgaaattgtgggatcctagaacgggg
aacaactcggccgtcatgacgtttaagcacgccgctccggttgaggatgtgctgtctctg
ccgtcggggactactgttcttgctgcggcagaaaactcggtcagtgtgctggatctggtt
gccgccagaccactgcacatgattaccaaccatcaaaagacggtgacgtcgctgagcctc
gcgtcgaatggacggcggttggtaacgggcggtttggagggccacgtcaaggtctttgag
acgacggggtggaacgtcgtcaacagcgtcaagtaccagtcgcctatcctgtctctacaa
gtcattccttctggggatggaagcgacgccagcgaccgccatctggccgtgggcatgcaa
tccggtgtgctgagcgtcaagacacgtctcacaggtacagaggcgaaccgcgaacgggag
agagaaaaggaaatggcggccctcatcgccgggacgatcagctcgcacgacgcgaaaaag
tcaaaacggaagcgaagaatcgaagccgccaacaagctggacatggtgggcgagggagcg
gatgtagtcatcgccaacgagcctcgcgttcatcggaaaaaggagcgtccctggcagaag
gatcttcgacacgcgcggtacgctcgtgcgctggaccaggtgattgatcgcaagtcaccg
gactacgcaccgcttaatgtgctggccctgctgctggcgctgcgtcaccgcagtgccgtg
cgggatgcccttgagaacagggacgagcagagcgtcgagccggtgctgcattgggtgtgc
ggacatatttgcgatcctcgatatgtcagcgtctgcgtggaggtggggttgcacctgatt
gatatgtatgtcgagtatgtgagcggatcggcggagttggctgagagttttcgagttctt
cacagacgggtcaagacggaggttgagagggcgcaggttgcttgtcagacgggcggtatg
ttggagagcttgatgatgggggctatgtga
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