Pochonia chlamydosporia: VFPPC_07397
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Entry
VFPPC_07397 CDS
T09407
Name
(RefSeq) replication factor A 1, rfa1
KO
K07466
replication factor A1
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03030
DNA replication
pchm03420
Nucleotide excision repair
pchm03430
Mismatch repair
pchm03440
Homologous recombination
pchm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VFPPC_07397
03420 Nucleotide excision repair
VFPPC_07397
03430 Mismatch repair
VFPPC_07397
03440 Homologous recombination
VFPPC_07397
03460 Fanconi anemia pathway
VFPPC_07397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pchm03000
]
VFPPC_07397
03032 DNA replication proteins [BR:
pchm03032
]
VFPPC_07397
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_07397
Transcription factors [BR:
pchm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
VFPPC_07397
DNA replication proteins [BR:
pchm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
VFPPC_07397
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
VFPPC_07397
MMR (mismatch excision repair)
VFPPC_07397
DSBR (double strand breaks repair)
HR (homologous recombination)
VFPPC_07397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
RADX
zf-like
Motif
Other DBs
NCBI-GeneID:
28850255
NCBI-ProteinID:
XP_018139591
UniProt:
A0A179F924
LinkDB
All DBs
Position
7:1696100..1698090
Genome browser
AA seq
595 aa
AA seq
DB search
MDAASALSKGCLDVIFNDIDKAAKLFPVPVMQCLQVKPMGASATGGERYRLVMSDGDHYV
QAMLATQANHVIHDEKLVRGSFARVKQYNPQNLKGKNILVILDLEVIESLGVQEKVGNPT
AVETNAAKDQTIAGNDFYGAKKEESKPQSMPSRPAVHDGGNIYPIEGLSPFQHKWTIKAR
VTMKSDIKTWHKPTGEGKLFSVNLLDESGEIKATGFNDQCDAFYDLLQEGSVYYISSPCR
VSLAKKQFSNLPNDYEIAFERDTRIEKAEDQTNVPQLRFNFCTIQDLQNVEKDNTVDVIG
VLKDVAEVSEITSKTSGKPFQKRELTLVDDTGYSIRVTVWGKTANSFDVNPESVLAFKGT
KVSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSSGRTDNFATHQNMASMGNAAGRKD
ENKTIAQVKDENLGMDEPAYYSIKATIVFVKQDNFCYPACSKEGCNKKVVETGDGWYCEK
CSVSHERPDYRYIASLNVADHTSHQWLSCFNETGEAIFGMSANQLMELKENDEAKFMAAF
DAVNCKKLNFRCRAKMDNFGDTQRIRYQVMSSSFLDFKSEGNKLAEMIKQYDMNA
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgcgtcggccctatccaagggatgtctcgatgtcatcttcaatgacatcgac
aaggctgcaaaactgttccccgtccctgttatgcaatgtctccaggtcaagcctatgggt
gcttcggctactggaggcgaacgatacagactggtcatgagtgatggcgatcactacgtt
caagcaatgctcgccacccaggcaaaccacgtcattcacgatgaaaaactggtgcgaggt
agctttgctcgcgtcaagcagtataacccgcaaaacctaaagggcaagaacatcctcgtc
atcctcgacctcgaggtcatcgaatcattgggcgtacaagaaaaggttggcaaccctaca
gctgttgagaccaacgcggccaaggaccaaacgatcgccggcaatgacttttacggagcc
aagaaggaagaaagcaagccacaatccatgccgtcaagaccagccgttcacgatggcggc
aacatttacccgatcgagggcctctcccccttccaacataagtggacgatcaaagctcga
gtcacgatgaagtcagacatcaagacatggcacaagcccacaggagaaggcaaactcttc
agcgtaaacctactcgatgagagtggagagatcaaggcgacaggcttcaacgaccagtgc
gacgccttttatgacctcttgcaagagggttccgtctactacatttccagcccatgccgc
gtctcactagcaaagaaacaattctccaatctgccaaacgactacgaaatcgcattcgag
cgagacacgagaatcgaaaaggccgaggatcaaaccaacgtgccacagctccgattcaac
ttctgcaccatccaagacctgcaaaacgttgaaaaggacaacaccgtcgatgtcattggt
gtactcaaggacgtcgccgaagtcagcgaaatcacatccaaaacatcaggcaagcccttc
caaaagcgagagctcactctcgtcgacgacactggctactccatccgcgtcaccgtctgg
ggcaaaaccgccaactcgttcgacgtcaaccctgaatccgtcctggccttcaaaggcacc
aaggtctccgactttggcggcaagagcctcagtctcctctcctccggcacaatgaccgtc
gaccccgacatccccgacgcccaccgcctcaagggctggtacgactcatccggccgaaca
gacaactttgccacgcaccaaaacatggcgagcatgggcaacgccgccggccgcaaagac
gagaacaagaccatagcccaagtcaaggatgagaatctcggcatggacgaaccggcatac
tactccatcaaagcgaccattgtcttcgtcaagcaagacaacttttgctacccggcctgc
tccaaggaaggctgcaataaaaaggttgtggagacgggcgacgggtggtactgcgaaaag
tgtagcgtgtctcacgaacgtcccgactacagatacattgcgtctctcaacgtagcagac
cacacaagccaccagtggctcagctgcttcaacgagactggcgaggccatctttggcatg
tctgccaaccaacttatggagctcaaggaaaacgacgaggcaaagtttatggctgcattc
gatgccgtgaattgcaaaaagttgaatttcaggtgcagagctaagatggacaactttggt
gatacgcagaggatccgataccaagtgatgagttcttcgttcttggactttaagagcgag
ggcaacaagttggctgagatgattaagcagtatgacatgaatgcttga
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