Pochonia chlamydosporia: VFPPC_07478
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Entry
VFPPC_07478 CDS
T09407
Name
(RefSeq) DNA-directed RNA polymerase III largest subunit
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VFPPC_07478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_07478
Enzymes [BR:
pchm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VFPPC_07478
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
VFPPC_07478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
28850321
NCBI-ProteinID:
XP_018142921
UniProt:
A0A179FJW8
LinkDB
All DBs
Position
4:174362..178708
Genome browser
AA seq
1448 aa
AA seq
DB search
MINSTEGPVKQQLEDKLPKRFKGIKFGIQSNQDIANQAVLEVSDRLLYDIENNRAPYRHG
PLDPRLGTSSKGGKCDTCQDSLQNCIGHFGHVRLPLPAFHIGYLRFIMSILQEICKDCGR
VLLEEPDRRSFLKQLRQPFLDNLRRTQICKRINEQCRKSKTCPYCGSVNGQIRKIGVLKL
AHDKFSFYNKSTAAKKVPPESKVKFDDSFTDAKRENPELEKHLRKAMEDLNPLRVLNLFK
MISPTDCELLGLDPAEGRPEMFIWQFVPAPPVCIRPSVAQDNASNEDDLTTKLADIVWVS
GMIRSALQKGSPIQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKSTRGFCQRLKGKQGR
FRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNG
CDVWPGAQGILKKEDDSYYKFNLRFGNRDFAAKQLSYGDVVERHLEDGDIVLFNRQPSLH
KLSIMSHVAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKYNL
ATPKNGEPIIAATQDFITAAFLLSSKDRFYDRKSFSYICMHMMEQGTKIEIPPPAIVAPK
ALWTGKQIFSVMMRPNKDCPVKINLDAKCRAYKARPGQCPDMDPNDGWLVVRNSEVMCGR
MDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSIGVGDVFPTETL
TIEKENLVSTAYKMCDDLIATFKLGKLDKAPGCNMEQTLENSISGILSKVRQQAGSYCID
TLSRNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIGGQRVPDGFQDRSLPHFHKNARQPP
SKGFVKNSFYTGLFPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT
VRTSAGGIVQFQFGADKLDPVDMEGSAEPVNFKRTWSHAETLTWDNEEASMTPSEIRAFC
DSMLSVERKRFPRHGLAYGEALDYEDQTDYGIDEHEGARRFLKTIENHVESLASKLDRVR
ELAGFSGSKMLKATAQDHADRTAKVTSTTLRLFIRMCLEKYKKAHVEPGHAVGAVGAQSI
GEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKNISTPVITCPLMNDQQIEAARVV
KGRIEKTYISDVLHFVEDEWRPGEGNVVLQIDKSALSDLHLGIGIYDIAESICKQRKLKI
LREDLSVYGERIVIRVRDASDMPARKTTRTKPALEDSGDMLLRANFLRRALPHVPISGYP
EATRAIIQTSEQNTHKVLVEGYGLRECMTTEGVIGTKTRSNNVMECRDVLGIEAARSTIA
DEISQVMGDMGIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFE
AAAGMKTDQIEGVSECIIMGQTMAVGTGAFQVVRRLGIRPGDTAQKKTIFEDAWNSEVTR
KKKARRRV
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgatcaactcgacagagggtcctgtcaagcagcagcttgaggataaactgcccaagcga
ttcaagggcatcaaatttggcattcagtccaatcaagacattgccaaccaagctgtcctc
gaggtgtccgaccgattgctgtacgacattgagaacaaccgagcgccatatcgtcatgga
ccgctggatccgagactgggaacgtcaagcaaaggcggaaaatgtgatacctgccaggac
tcgctgcagaactgtattggccactttggccatgtcaggctgcccctcccagcttttcac
attggatacctccgattcatcatgtctatcctgcaggagatttgcaaggactgcggaaga
gtattgctggaggagcctgatcgacggtccttcctcaagcagctacggcagcccttcctg
gataatcttcgtcgaacccagatttgcaagaggatcaatgaacagtgccggaagtctaag
acgtgcccatactgtggatctgtgaatggccagattcgaaagattggtgttcttaagctc
gcgcacgataaattttccttttataataaatctaccgctgctaagaaggttcctccggag
agcaaagtcaagtttgacgactcattcaccgacgcaaagcgggagaatcccgaacttgag
aaacatcttcgcaaagccatggaggatctcaaccccctcagagtcctaaacctctttaaa
atgattagtccgacagactgcgagctgctcggtctcgatccggcagagggccgacccgaa
atgttcatctggcagttcgtgcccgctccccccgtttgcattagaccttctgtggcacag
gacaatgcgagtaacgaagacgatctcacgaccaagctggcggacattgtatgggtcagt
ggcatgatccgttcagctctgcagaaaggctctcccatccagaccattatggaacagtgg
gagtacctccaaacccagattgccatgtacgttaacagcgatgtgcctggcctccagcag
ccaggctttggaaagtccaccaggggtttctgccaacggttgaaggggaaacagggccga
tttagaggcaatttgtctggaaagcgtgtggatttctctggccgaaccgtcatttctccc
gaccctaacctgggcatcgaccaagttgccgttccccaactcgtcgcaaaaaacttgaca
tatcctgaaaaagtcaaccggcaaaacatcgaaaagctacggcagtgcgtccgaaacggc
tgcgatgtctggccaggcgcccagggcattctaaagaaggaagacgacagttactacaag
ttcaatctgcgattcggtaacagagactttgcagccaagcagctcagctacggtgatgtc
gtcgaacggcatttggaggatggtgacattgtgctgttcaaccgtcaaccgtctctacac
aagcttagtatcatgagccacgtggccaagattcgaccttggaggacgttccgtttgaat
gagtgtgtgtgcaacccgtataacgctgactttgacggtgacgagatgaacctccacgtt
ccgcagactgaagaggcgcgagctgaggctattaacctcatgggtgtcaagtacaacctt
gccacgcctaagaatggagaacctattattgctgccacgcaagatttcatcacagctgcc
tttttactaagtagcaaagatcgattctacgatcgtaagtccttctcatacatttgcatg
cacatgatggaacaaggaaccaagatcgaaatccctccacctgccattgtagcaccaaag
gctctttggacgggtaaacaaatctttagcgtcatgatgagaccgaacaaggattgtccc
gtcaaaatcaacctcgacgcaaagtgcagagcgtacaaggcacgacctggccagtgccct
gacatggatcccaatgatggctggctcgtcgttcgcaattcagaagtcatgtgtggccgt
atggacaagtcaacagttgggtccggaaagaaggactctatattctatgttattcttcga
gattttggaccagatgaggcagttattgccatgaatcgattggccaagctctgtgccaga
gcactcacaaatcgaggtttctctatcggtgtcggtgacgtcttccccacggagacactg
accatcgagaaggaaaacctggtatcgacagcatacaaaatgtgtgacgacctcattgcg
acttttaagctcggcaagctagacaaggctccaggctgtaacatggagcagactctggaa
aattccatctctggtattctcagcaaagttcgacagcaggccggttcttactgtatcgac
accctcagtcgcaacaatgctcccctgatcatggcacagtctggttccaagggctccgac
attaacgttgcgcagatggtggcagtcgtcggccagcaaattatcggcggccagcgagtt
cctgatggattccaagaccgcagtttgccacacttccacaagaatgcacgtcagccccca
tcaaagggtttcgtcaagaacagtttctatactggcttgtttcccacggagttcctgttc
cacgctatttctggccgtgaaggtctggttgatactgctgtcaagactgccgaaactggt
tacatgtcccgacgactgatgaaatctttggaggatttgtcgacgcagtacgacgacacg
gtcagaacttctgctggtggcattgttcagttccaatttggagccgacaaactcgatcca
gttgacatggaaggttccgcagagcctgtcaactttaaacggacttggagtcacgccgag
acgctcacttgggacaacgaagaggcttccatgacccccagcgaaattagggcattctgc
gattccatgctctcggtggagcgaaaacggttccccagacacggattagcatatggcgag
gctcttgactatgaagaccagaccgattacggcattgatgaacacgagggtgcccgacgc
ttcctcaagactattgaaaatcatgtcgagagcctagcgtctaagcttgaccgagtacga
gaactggctggcttctccggttccaagatgctcaaagctacggcccaagatcatgcagac
cgtactgccaaggtgacgtcaacaacactgcgtctattcatcagaatgtgcctggagaag
tacaagaaggcgcacgtggaacctggtcatgctgtcggagcggttggtgctcagtcaatt
ggtgaacctggtacgcagatgacgctcaagactttccattttgctggtgtcgctggtatg
agtattacgcaaggtgtgccgcgtatcaaggaaattatcaacgcctccaaaaacatcagt
accccggttattacatgccctctaatgaatgaccaacaaattgaagcagccagagttgtc
aagggtcgtatcgaaaagacgtacatctccgacgtactgcactttgttgaagacgaatgg
cgtccaggcgagggcaatgtagtgctgcagatcgacaaaagcgctctgtcggacctgcac
ctgggcattggcatttacgatattgccgagtctatctgcaaacagcgcaaactcaagatt
cttcgtgaagatttgtctgtctatggcgagagaattgtcatccgagtccgagatgcaagc
gatatgccggcgagaaaaaccacgcgcaccaagcctgctctcgaggacagcggcgacatg
ctactgcgagccaacttcctgcgtcgggcactcccacatgtccctatttccggctacccc
gaggccactcgtgccattatccagacatccgagcaaaacacacataaggtgttggttgaa
ggttacggattgcgcgagtgcatgaccacagaaggtgtcatcggcaccaagactcgctcc
aacaacgtcatggagtgtcgtgacgtgctcggcattgaagccgcccgaagcaccattgcc
gatgagattagtcaagtcatgggcgacatgggtatcgatcctcgacacatgcagctgcta
gctgatgtcatgacctacaagggagaagtgttgggtattacgcgattcggtctgtccaag
atgcgagacagtgtactacagcttgcgtcttttgaaaagacccccgaccacttgtttgag
gctgctgcgggcatgaagacggaccagattgagggtgtaagtgagtgtattatcatggga
cagacaatggctgtgggtactggtgcgttccaggttgtccgacggctgggtattcgacca
ggagacacggcgcagaaaaagactatatttgaggacgcgtggaattcggaggtgacgaga
aagaagaaggcaaggaggagggtgtag
DBGET
integrated database retrieval system
