Pochonia chlamydosporia: VFPPC_07499
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Entry
VFPPC_07499 CDS
T09407
Name
(RefSeq) RNase3 domain-containing protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_07499
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VFPPC_07499
microRNA pathway
RISC loading complex
VFPPC_07499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
DSRM_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
28850340
NCBI-ProteinID:
XP_018142949
UniProt:
A0A179FJY2
LinkDB
All DBs
Position
4:<252909..>257639
Genome browser
AA seq
1535 aa
AA seq
DB search
MTQELESMVAPEAQNPVEISSLLVHSSKSTEDRDRHATNSKEEESYQSDTSDDMEWYRLE
SKPDKPPKQAACQNSQHSAFMSWVADTNREPLPSTHSYKSDIEALSEDQTSAATPPKIIH
SPRQYQLDLFERAKQQNTIVVLDTGLGKTLIAALLLQHTINLELERRSRGQAKKFAFFLV
DKVALCIQQHRFLERNLEYPMGQIFGDSPGIKKQQTWENQVDQNMAIVCTAQILLDLLGS
GIIRMNQINLLIFDEAHHTKKNHPYATIMREHYMQMKIDRPRILGMTASPVDAKTKDFQA
AAFELEAALCSRIATISNEALSQCLQKKQQIERVEHFAPLASLEDAETVLCRELSNLQLT
SPSLQKHIDIAKDVASIIGPWAADQYWKLFLKSQRASLVMHELDAADVHISGEEEAYHEL
GSQLDDMTLLKIRKIVNAHFQREQASNIGRRDNDFSTKVQTLHGILCNEFAANQSTRCIV
FVQKRYIAYLLSETFRHSALRIPKVETDFLVGSQCPSSSIVAMSISAQTIALNRFSHGQT
KCIFATQVAEEGIDVKDCDLIIRFDMYDSAIQYIQSKGRARHEKSTYISMVEEGNVQDHR
RIMQTKRDMNALRVFCSSLPSDRKVEDADEAENLTEQEAKKHIIFEVPETGARLTFTSSR
QVLAKFVSAVCNSADAHPEYVTIPSGNKFITTILLPDACPVKTFIGTPQRNKTLARGSAA
FKACIELLNRKYVNGHLQPIYQKVVHKMRNARLAISDKKRSEYGMRDKPSIFSGPFGTTT
GMFMATLAIEGLCPTGRRGRPLYILTRSALPAIAPVHLYIDGSIRSVARQIQHREPLAVT
ENQIRSLTNFTLTLFSDVFSKAYENDQGNIPYFLAPSTTQRDNSCTNEVEFQFSENACAQ
PAMIDWNLMETVGIDEIPVSTICTSPHNFEKRFVFDPWDGSRKFFTSIVNKEYRPFDPVP
SDAPVPKSRSYQRVEQNIAEYSNSLTLPSRQRVTWNSEQPVFDAELLPLRRDLFREPQHG
DVASSRSCCIILEPLTISTIPIDIVVTALTLPVIMHRIESTAIAMDACQLVDLSVEPPLA
LEALTQTDEGADTEDNQNYERLEFLGDSFLKMATTISLFTLLPDENEAGYHVQRMLMVCN
QNLFNHALHRGMQEYVRSKTFDRRTWYPDLKLLKGKAAKPVNTHSLSDKAVADVCEALIG
AAYMSQPEGVMDLAVKAVTKMVRSKYHKMERFSDYYGIHVTPDWQRATPTASERFAADMI
EKRIGYRFNSPGLLRSAFKHPSYPFHPDIPNYQRLEFLGDALLDVAIVDFLFRRYPQADP
QWLTEHKMAMASNHFYSCLCVELGLHRHLLTTNSSMMGHMAAFVESVDKAKTRATEPGDK
VPRSNFWLDVEHPPKALSDILEAVVGAMFEDSKYDYDTVRRFFSTFISPYFQDMSLYDTY
TADHPVSKLTKLMQDTFCCRSWRLCVSAVPCGVEEGAAAVTNDNVVCALMIHKRKAVHSV
RASGKYAKVDVAMMALRQFGDLDKDKFRSMMGCDC
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaactggagtccatggtggcccctgaggcccagaacccagttgaaatttcg
tccctcctagtccattcctcaaaatcgaccgaggatagagatcggcacgcaacaaattca
aaagaagaggaaagttaccaaagcgatactagtgatgacatggagtggtatcgactggaa
agcaaacctgataagcctccaaagcaggcagcctgccaaaactcccaacattctgccttc
atgtcttgggtcgcggatacgaatcgcgagcctctgccgtcgacacactcatacaaatct
gacattgaagctctctcggaagatcaaacatctgcagcaacacccccaaaaattatacac
tccccgcgacaatatcaactcgacctctttgagcgtgcgaagcagcaaaataccatagtt
gttcttgacacagggctagggaagacactcattgctgccctgttgcttcagcatactata
aatcttgagctggaaagaagaagtcgaggtcaggcaaagaaatttgccttctttctagtt
gacaaagttgccctatgtatacagcaacatcgatttctggagcgtaatctcgaatatcct
atgggccaaatatttggagacagccctggtattaagaagcagcaaacatgggaaaaccaa
gttgaccagaatatggctattgtttgtacggcgcagatcctcttggatctcctgggaagt
ggtattattcgaatgaatcagatcaatttgcttatttttgacgaagctcatcataccaag
aagaaccatccctatgctaccataatgcgggagcactatatgcaaatgaaaatagaccgc
cctcgcattctgggcatgactgcttctcctgtcgatgcgaagacgaaggacttccaagcg
gcggcatttgagctggaagcagcactctgtagcagaattgctactatatctaacgaagca
ttgagtcaatgcttgcagaaaaagcaacaaatcgagcgtgttgaacattttgcccctctg
gcgagcctggaggatgcggaaactgtcctctgtcgcgaactgtcaaacttgcagctcaca
agtccaagcctccagaagcatatagatatagccaaggatgtagcatccatcatcgggccg
tgggcagcagatcaatactggaaattatttttgaagagtcaaagagcatcactggtaatg
cacgaacttgatgcggctgacgtgcatatttctggagaagaagaggcgtatcatgaactg
ggatctcagctggacgatatgacgcttctcaagattcgaaagatcgtcaatgctcacttt
cagagggagcaggccagcaatattggaagacgcgacaacgacttctccaccaaagtccag
actcttcacggaattctgtgtaatgaatttgcagccaatcaatcaacacggtgtatcgtg
tttgtgcaaaagagatacatcgcgtatctcttatctgaaacgtttcgacactctgctttg
cgcatccccaaagtggaaacggactttttggttgggtcacagtgtccctcctcttccatt
gtggcgatgtccataagcgcccaaaccatagccttgaatcgatttagtcacgggcagacg
aagtgcatttttgccacacaagttgcagaagaggggatcgacgtcaaagactgcgacctc
ataattcgatttgatatgtatgattcggcaattcaatacattcaatccaaaggaagggca
aggcatgagaagtcaacttatataagcatggtcgaagagggaaatgtacaggatcaccgc
agaatcatgcaaacaaagagagatatgaacgcgttgcgtgtattctgctcttctctacct
tctgataggaaagtggaagacgcagacgaggctgaaaatctgaccgagcaagaggccaag
aagcatattatctttgaagttcccgaaacaggagctcggctgacattcacttccagtcga
caagttctggccaagtttgtttctgctgtttgcaacagcgcagatgctcatccagaatac
gttactatacccagtgggaataagtttatcaccacaattctcctacccgacgcatgtcct
gtgaagaccttcatcggtactcctcagcgaaataaaactcttgcacgtggttcagccgca
ttcaaagcatgcattgagctactcaaccgcaaatatgttaatgggcacctccagcccata
tatcagaaagtcgtacacaagatgcggaacgcgaggctggctatcagtgacaaaaagagg
tcggagtatggtatgagggacaaacctagcatattttcaggaccatttggcacaaccaca
ggaatgtttatggccaccttggccattgaagggctgtgtcctacaggaagaagaggacgg
ccgctttacattctaacacgttcggctttgccagcaattgcaccggtacatctctacata
gacggaagtattcgctcagtagccaggcagatacaacacagagagccgctggctgtgact
gagaatcagattagatccctaaccaactttacactcacgttatttagtgacgtgttcagc
aaggcttatgaaaacgaccaaggaaacattccttactttctagcaccatctacaacacag
cgagacaacagttgtacgaacgaagtggaatttcagttcagtgagaatgcctgtgcccag
ccggcgatgattgattggaacctcatggaaaccgtgggtatcgatgagataccagttagc
actatttgcacttcaccgcataatttcgaaaaaagatttgtttttgacccctgggatggg
tcccgaaagtttttcaccagtatagtgaacaaggagtaccgcccttttgatccagttcca
tcagatgcaccggtgccaaagagccgtagttatcaacgagtagagcaaaacattgcggaa
tacagcaacagtttgacattaccatctcgacaaagggtgacttggaactcagagcagcca
gtttttgatgctgagctactccccctgcggagagacttgttccgcgagccgcagcacggg
gatgtcgcttcttctaggagctgctgcattattttagagccgttgaccatatccacgata
cctatcgacattgtcgtcacggctctgactttgccagtcatcatgcaccgtattgagtca
acagccattgcgatggatgcttgtcagcttgttgacttgtcggttgagcctccgttggcc
ctcgaggcactcacacagaccgatgaaggcgccgacacggaagacaaccaaaactatgag
cgactggaatttctaggagattcctttttgaaaatggccacaacaatatcgttatttaca
ctccttccagatgagaatgaggctggatatcacgttcaacgtatgcttatggtatgcaac
caaaacctttttaaccacgcactgcacaggggaatgcaggaatatgtacgatccaagact
ttcgatcggcgtacttggtacccagacctcaagctgctcaaaggaaaagctgctaaacca
gtcaatacgcacagtttgtcggacaaagccgttgcagatgtttgtgaggcactcattggt
gctgcatatatgtcacaaccggagggggtaatggacttagcggtgaaggccgttaccaaa
atggtaagaagtaaatatcataaaatggaaaggttcagtgactattacggcatacatgtc
accccggactggcaaagagcaactccaaccgcgagtgaacggtttgcagccgatatgatt
gagaaacgcattggctacagattcaactctcccggtttacttcgaagcgcatttaagcat
ccgtcatacccctttcacccagacattccaaactatcaaaggcttgaatttctgggtgat
gctcttctcgacgtcgccattgtggacttcttatttcggcgctacccacaggctgatccg
cagtggctcacagaacacaagatggcgatggcttcaaatcatttttactcttgtctctgc
gtagagttaggactgcacagacacttactaacaacaaactcttctatgatggggcatatg
gccgcttttgtcgagagcgttgacaaggccaagaccagggccacagaaccaggggacaag
gtgccgcgatccaacttctggctcgatgtagagcaccctccgaaggcactctcggacata
ttggaagcggttgtgggagccatgttcgaagattcaaagtacgactatgacactgtccgc
cgatttttcagcacgttcatctctccatacttccaggacatgtcgctatacgacacgtat
actgcggaccaccccgtttctaagctcaccaaacttatgcaagacacattttgctgtcga
tcttggcgattatgtgtgtcggctgtgccttgtggtgttgaggaaggggctgctgctgtc
acaaacgacaatgtggtttgcgcgctgatgatacataaacgaaaagcagtacatagcgta
cgagcgagtggaaagtatgcaaaagtggatgttgcaatgatggcattgaggcagttcggg
gatctggacaaggacaagtttcggtctatgatgggctgtgactgctga
DBGET
integrated database retrieval system
