Pochonia chlamydosporia: VFPPC_07760
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Entry
VFPPC_07760 CDS
T09407
Name
(RefSeq) ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_07760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_07760
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_07760
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_07760
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
VFPPC_07760
mRNA degradation factors
5'-3' decay
Decapping complex
VFPPC_07760
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
VFPPC_07760
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
28850564
NCBI-ProteinID:
XP_018143255
UniProt:
A0A179FLE7
LinkDB
All DBs
Position
4:complement(<1132704..>1134457)
Genome browser
AA seq
504 aa
AA seq
DB search
MTDQLVDQLRSTQLSDGIPAQNDDWKKNLKLPAKDSRQQTEDVTKTKGLEFENFALKRDL
LMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKVSKIQC
LILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRLQDPVHIVVGTPGRILD
LAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFS
DKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVE
LLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVIN
FDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPPSIDKSL
YVYENPDSIPRPISNLPRNNQQSQPAQPQQPMAHQPQGNWQSQNGHQNHHYGRGRGRGRG
FRGRGAAGGGGGGRGRGQPREAQS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcagctggtagatcagctgcgaagcacacaactcagcgatggcattcctgca
cagaatgatgattggaagaagaacctgaaattgcctgccaaggatagcagacaacaaaca
gaggatgttaccaagacgaaaggcctggaattcgaaaactttgcgttgaagcgagacctc
ctcatgggtattttcgaagctggtttcgagaagccctcccccatccaagaagaagccatt
cccgtagccttgaccggccgggacattctggccagagcgaagaatggtactggcaaaacc
gccgcgttcgttattcccgccttggaacgcatcaaccccaaggtctccaagattcaatgt
cttatcctcgttcctactcgtgagcttgccatgcaaacgtcacaggtttgcaagacgctc
ggtaagcatctggggatcaacgtcatggtcaccaccggcggtaccggtttgcgtgatgac
atcctgcgtctgcaggaccctgtccatattgtcgttggaactcccgggcgtatactggat
ctggcaggaaagagtgttgccgatctcagcgaatgccccatgttcatcatggacgaggcc
gacaagcttctgtccattgagttcactcccgtcatcgagcagctcctgcagttccacccc
aaggaccgccaggtgatgctcttctccgccaccttccccctctctgtcaaggacttctct
gataagaacatggtctccccttacgaaatcaacctcatggacgaactcaccctccgcggc
atcactcagtactacgcctttgtcgaagagaagcagaaggttcactgcctgaacacactc
ttctccaagcttcagattaatcagtccatcatcttttgcaactcgacaaaccgtgttgag
ctactcgccaagaaaattaccgaactgggctactcttgcttctacagtcatgctagaatg
cagcagcaagcgcgtaaccgcgtcttccacgacttccgcaacggcgtttgccgaaacctc
gtctgctcagatcttctcacccgtggtatcgatattcaggctgtgaatgtcgtcatcaac
tttgattttcccaagaacgccgaaacctacctccaccgaatcggtcgatccggccgttat
ggtcaccttggtttggctattaacctgatcaattgggatgaccgcttcaacctttacaat
atcgagagagatttgggtactgaaattcagcccattcctcccagcattgacaagagcctt
tacgtttacgagaaccccgattcaatccctcggcccatttccaaccttcccagaaacaat
cagcaatcccagccagctcagcctcaacagcccatggctcatcagccacagggcaactgg
caaagccaaaatggccaccaaaaccaccactatggtcgtgggcgtggacgaggacgtggt
ttccgaggacgaggtgctgctggcggcggtggcggcggtcgaggccgtggccagccacgt
gaagctcaatcatga
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