Pochonia chlamydosporia: VFPPC_07989
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Entry
VFPPC_07989 CDS
T09407
Name
(RefSeq) vacuolar assembly protein
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm04138
Autophagy - yeast
pchm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
VFPPC_07989
04148 Efferocytosis
VFPPC_07989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pchm04131
]
VFPPC_07989
Membrane trafficking [BR:
pchm04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
VFPPC_07989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
Beta-prop_THOC3
Vps39_1
NBP1
TPR_7
TPR_PEP5_VPS11
zf-RING_Vps41
Beta-prop_WDR3_2nd
Beta-prop_LRRK2
zf_RING_Vps8
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
28850761
NCBI-ProteinID:
XP_018143525
UniProt:
A0A179FMB8
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All DBs
Position
4:<1854942..>1859111
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AA seq
1310 aa
AA seq
DB search
MTDQSDRATGNDRLESTLQIPPNISPENESDNGPETPVVSGSNTSVTVERTEPDPVTTIA
TSANAGRGSNHGPDDEDDEEEDEEGDDEDDDEEDEEPRLKYARLTQSLSGLYRNGDATSA
FLVGGDKMIIGTHNGNIHVIQLPTLQPLRVYHAHSASVTSISTSPYPPPLSNDRSERPPP
SQQPQAQPNLRPDASPASASRRPKGPAQLPRIPSNDIYVATSSMDGNVCIQSLLDMKDVH
LRNFARPVQAVALSPEFKSDRTYLSGGLAGQLILTVGGGQGRSTSTTTGTAVAAASGWLG
SMGLGTSSGKDTVLHSGEGTISSIKWSLSGKYVAWLNEYGIKLMRSKLHLESAESEGAWQ
RIGHYDRPQTEEWEAMASVWKGRLEWIDEQAIETDECRSSGDGAANLAISAPKKTVERLL
VGWGGTIWIIHVHHGPTSDSGRNGHDKPFGRAEVAKILRMDCIISGISLYTPSTLLVLAF
CPTDDDEDEQVPEQPTVSGHKSRLSSGSAGSEPAGGIRRRQNNHPPELRLIDLDSQMEVD
KDRLGVSRFERLGPADYHLGVLPAQAAATAVASRGALEALAGFGNDMWNVAINPKSLFSS
GASIMSRDSGDDAASVSKTGSTAGTIRRGQGKIPGPITIHPSLSKPGIKIFMHSPYDCIL
GTKRDLADHLQWLVEHEQYQQAWELLDENPDIVATTPEKPIDAGPATPSARQAAVEDFFD
GDSAVASTQQDVHSQAIKEKRRIGELWIQQVIEDGNWRRAGEVCGQVLGTPDRWEKWVWT
FAGAKHFDEITPYIPSQPMLPPLPTTIYEVVLGHYIQNDKPRFRELLDLWTTDLFDVSTI
TTALENQLKFRDVREDSIEDGEKGRDWSIVMESLARLYEAGGRHREALKVYIKLHDADSA
FRLIRERHLAEAVADDIPGFIGLRVAPERMKQMTQQELVEATSEAITLLVDEAQHGLVRP
DIVVEQLEAKKMNPYLHFYLKGLWRGQGIKEHSAENIERLVMDSQALVDSYADLAVHLFA
TYDRALLMEFLKASTSYTFEKAVQECEACSYHDELVYLYSKTGQMKRALYLIIDRLKNVQ
KAIEFAKEQDDPDLWNDLLDYSMDKPSFIRALLEQVGTTINPITLVRRIPEGLEIPGLRE
GLTHMMKEHELQHSISSGVAKVLRSELAAAQNDLRTGRQKGIKFEVVQPDGEDNPAVPSR
GQAAAAAAERNAGEHPMGERAEHDHVVPQPGRCASCHEAFTEFEMEMILGFACGHVFHVS
HLLELLHKGRKADVDLGAEPGETGRHSVGMKVMRARLLRDKVREGCPICH
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccagtccgatcgagccacaggcaacgacaggctggagtccacgcttcagatc
cctcccaacatttcgccggaaaatgaatctgataatggtccagaaactccagttgtaagc
gggagcaatacatccgtgactgtagagaggactgagccggatcctgtcacaaccatcgcc
accagtgccaatgcaggccgcggatccaaccatggcccagatgacgaggacgatgaggaa
gaagatgaggagggggacgatgaggatgacgacgaggaagatgaggagcctcgtctcaaa
tatgcgcgcttgacacaaagcttaagtggtctctatcgtaacggcgatgcgaccagcgca
ttcctcgtcggaggagacaaaatgattattggaacccataacggcaacattcatgtcatt
caattaccaactctacaaccccttcgagtctaccacgcacattcagcatcggttaccagc
atatcgacgtctccataccctcctcccttatcaaacgaccgatcagaacggccgccgccg
tcgcagcagccccaggcccagccgaatttgcgacccgatgcctctcctgccagtgcctct
aggcgacccaagggaccagcacagctgccacggataccctcgaacgacatatacgtagct
acttcgtctatggatggcaacgtatgcatccagtcacttttagatatgaaagacgtccat
ctaagaaactttgcacggccggtccaagctgtcgcgttatccccagagttcaagagtgat
cgtacatatctatccggtggtttggcgggccagctcatcttgactgtaggcggtggccag
ggcagaagtacgtccactacgaccggaacggcggtcgcagcagcgtctggatggcttgga
agcatgggtctaggtaccagcagtggtaaagacacagtgttgcattccggagaaggtacc
ataagcagcattaagtggtccctttctgggaagtatgtcgcctggttgaacgaatatggc
atcaagttgatgcgttccaagcttcatctcgaaagcgctgagtctgagggggcttggcag
cgaattggacattatgatagaccacagacggaggaatgggaggccatggcaagcgtgtgg
aaaggtcgactagagtggatcgacgagcaggccattgagactgatgaatgtcggtcttcg
ggggatggtgctgcaaatctcgcaatttcagcgccaaagaagaccgtagaaaggcttctc
gtaggctggggtggtaccatttggattattcacgtccatcacgggcccactagcgatagt
gggaggaatggtcacgacaagccgtttggtcgggcagaagtcgccaagatcttgcggatg
gactgcattatttcgggaatctccctctacactccgagtaccttacttgtccttgcattt
tgcccgacggatgatgacgaagacgaacaagtgccagagcaacctacagtttcgggccac
aaatcaagattatcctcaggttctgcaggaagtgaacccgctggaggcataagacgccgc
cagaacaatcaccctcccgaactgaggcttatcgatctcgattctcagatggaagtagat
aaagatcgccttggagtgagtcgctttgagcgccttggcccggctgattaccaccttggt
gttcttcctgcccaagcagcagcgaccgcagtggcatcccgaggcgcattagaggcactg
gccggctttggcaacgacatgtggaatgtggctatcaaccctaaatcgctttttagttct
ggtgctagtataatgagcagagacagcggagacgatgctgcgtctgtctccaagaccggc
agcacggctggaacaattcgccggggacaaggcaagatcccaggtcccatcactatccac
cccagtttgtcgaagcccggcatcaagatattcatgcacagtccatatgactgtattctt
ggcacaaaacgagatttggcagaccacttgcaatggcttgttgagcacgaacaataccaa
caggcttgggagctattagacgagaatccggacatagtcgcaaccacaccagaaaagccc
attgatgcggggccagcaaccccatcagcacgacaagcagctgtagaggatttctttgac
ggcgattcggcggtagcgtccactcagcaagatgtacactcccaggccatcaaggaaaaa
cgacgcatcggagagctatggattcaacaggtgatagaggatggcaactggcgacgggca
ggtgaggtctgtggccaagttcttggcaccccagacaggtgggagaaatgggtatggaca
tttgccggtgccaaacacttcgacgaaattacaccgtatattccgtcgcaaccaatgctt
cctccgctcccaacaacgatatatgaggtagttttgggccattatatccagaatgataaa
cctcgatttcgggagctgttagatctgtggacaacagatttgtttgatgttagcaccatc
acgactgccttggagaatcaactcaagtttagagatgtccgcgaggatagcattgaagat
ggagagaaggggagagactggtcgattgtgatggaaagtctcgcgcggctttacgaagct
ggtggacggcatcgggaggctctgaaggtttatatcaagcttcacgacgctgattccgcg
tttcgtctcattagagagcgccatctagccgaagctgtcgcagatgacatcccaggtttt
ataggcttgagagtagcaccagagaggatgaagcaaatgactcaacaggaacttgtcgag
gcgacgtcggaggccattacgctgcttgtggacgaggctcaacatggattggttcgtccc
gacattgttgttgagcaactggaggccaaaaagatgaacccgtatcttcatttttacctc
aaaggcttgtggcgaggccagggcatcaaagaacactcagcagagaacatcgaacggctt
gtcatggacagccaagccctggtggatagctacgccgacttggccgttcacctatttgcg
acatatgatagagcgctgttgatggagtttctcaaagcatcaacctcgtacacgtttgaa
aaggctgtgcaagaatgcgaggcatgttcatatcacgatgaacttgtgtacttatactcc
aagactggccagatgaaacgtgccttgtaccttatcattgatcgcctcaaaaacgtccag
aaagcaatcgaatttgccaaggagcaggacgacccggatttgtggaatgatcttctcgat
tacagtatggataagccaagcttcatccgcgccttgctggagcaggttggcactaccatc
aaccccattacactggtgaggcggataccggaaggccttgagattccaggtctgagagag
ggactcacacacatgatgaaggagcacgaactgcagcacagcattagctcaggggtggcc
aaagttttacgaagcgaacttgcggctgcacagaatgatttgaggactggcagacaaaaa
ggcatcaagtttgaggtagtacaaccagatggtgaagacaatccagctgttcccagcaga
ggccaggcggcggcggcggcggcagaaaggaacgctggcgagcacccaatgggtgagagg
gcggagcacgaccatgtcgtaccgcaaccagggcgctgtgcgagctgccacgaggcattt
accgagttcgagatggaaatgatacttgggtttgcgtgcggacacgtatttcatgtcagc
cacctacttgaacttcttcacaagggaagaaaagccgacgttgatctaggcgcggaacct
ggtgaaactgggcgacattccgtgggaatgaaggtcatgagagccaggctgttgcgagat
aaggttagagagggctgtccaatttgtcattga
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