Pochonia chlamydosporia: VFPPC_08099
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Entry
VFPPC_08099 CDS
T09407
Name
(RefSeq) DNA mismatch repair protein msh-2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VFPPC_08099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_08099
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
VFPPC_08099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
Motif
Other DBs
NCBI-GeneID:
28850856
NCBI-ProteinID:
XP_018143650
UniProt:
A0A179FNC0
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Position
4:2216763..2219781
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AA seq
961 aa
AA seq
DB search
MPTTRLGLHHLERLHARGLFRSLLFGTGFEKSDKKSSINMASRPELKLDDEGGFIRFFKS
LPDEGEDTIRIFDRGDWYTAHGDNASFIAKTVYKTTSVLRQLGRNDHTGLPSVTMTVTVF
RQFIREALFKLGKRIEIWESASGRMNWKCVKQASPGNLQDIEDDLGGQIESAPMIIAVKI
SAKASDARNVGVCFADASVRELGVSEFLDNDLYSNFESLLIQLGVRECVIQIDKSEKDKD
PELAKLRQIIDNCGVAIAERPAGDFGTRDIEQDLARLLKDDKSVNLLPQTDLKLAMGSAA
SLIKYLGVLQDSSNFGQYQLYQHDLAHFMKLDAAALKALNLMPGPRDGSKTMSIYGVLNH
CKTPVGSRLLAQWLKQPLMDKDEIEKRQQLVEAFFTDTELRQTMQEEHLRSVPDLYRLSK
RFQRGKANLEDVVRAYQVVIRLPGFIGTLEGVMDEAYRDPLDAAYTTKLHDLSDSLGKLQ
DMVEQTVDLDALDRHEYIIKSEYDQGLRIIRKKLDQLDRDIRAEFHEAARDLGQEADKKI
FLETSHKVHGVCMRLTRQEAGCIRNNSRYQECSTQKNGVYFTTKKMQSYRREYDQLSQNY
NRTQSSLVHEVVQVASSYCPVLERLAGVLAHLDVIVSLAHCSVHAPEAYVRPKIHPRGEG
QTRLVGARHPCMELQDDVQFITNDVEFTRDKSSFLIITGPNMGGKSTYIRQAGVIALMAQ
VGCFVPCTEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATKESLIIIDEL
GRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALAEQYPQVRNLHVTAHISGTG
QDNSKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTTKHEDNTL
SYSKEDVEEGSAMLKQLLVQWKEQVNNGEMSQEEKVAKLKELVAADSKLLANPFFQSVKA
L
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgacgcgactcggcctccaccatctcgaacgactgcatgcgaggggacttttt
cgatcactgttgtttggtacagggtttgaaaagtcggacaagaagtcatccatcaacatg
gcttcaagaccagagctgaagctcgacgatgagggcggcttcattcgattcttcaagtcg
cttcccgatgaaggagaggacaccatcaggatattcgaccgcggtgattggtacacagca
cacggcgacaatgcctcattcattgcaaagacggtctacaaaacgacgtctgtcctccgc
caattaggtcgaaacgatcataccggactcccgtctgtaacgatgaccgtcactgttttt
cgccaatttattcgagaagctctattcaagctcggtaaacgaatcgaaatatgggagagc
gccagcggacgcatgaactggaagtgtgtcaagcaggcttccccgggtaatctgcaagac
attgaagacgatcttggtggtcaaatcgagtctgctccaatgattatagccgtcaaaata
tccgccaaggcatctgatgctcggaatgttggtgtgtgcttcgcagatgccagcgtgagg
gaactgggtgtcagcgagtttctagacaacgacctctattccaactttgaatctctgctc
atccaactgggcgtgagggagtgcgttattcagatcgataaaagcgagaaggataaagac
ccagagttagccaaactgagacaaatcattgacaactgcggagtggccattgcagagcga
ccggcaggggactttggcacccgagatatcgagcaggaccttgcccgactgctgaaggat
gacaagtctgtcaatcttctcccccagactgatctcaaacttgcaatgggatctgctgca
tccctcatcaagtatcttggcgtcctccaagactcgtccaattttggccaataccagctc
taccagcacgacttggcacacttcatgaagttggatgcagctgctctcaaggctctgaat
ttgatgcctggtccccgtgacggatcaaagacaatgagcatttacggcgtgctcaatcat
tgcaagacgccggtaggcagccgcttgctggctcagtggttaaagcagcccttaatggac
aaggacgagattgagaaacgccagcagctggtcgaggcattctttaccgacactgagttg
agacaaacaatgcaagaagaacatttgcgttccgttccagacctctatcgcctgtccaaa
cggttccagcgaggcaaggccaacttggaggatgttgtccgggcttaccaggtggtcatt
cgactacctgggtttattggcacgctcgagggcgtcatggacgaagcttatcgggatcca
ctggacgcagcatacaccaccaagctgcacgacctgtctgacagtctcggcaagctgcaa
gacatggtggaacaaacagttgacttggacgctctcgacagacatgagtacataatcaag
tccgagtatgaccaggggttgcgaatcatccgcaagaagctggatcagctcgaccgcgat
atcagggcagagttccatgaggctgcccgtgatctgggtcaagaggcagacaagaagatc
ttcctggagaccagccacaaagtacacggagtatgcatgaggttgaccaggcaagaagcc
ggttgtattcgaaataattccaggtatcaggagtgctccacacagaaaaacggcgtatac
ttcaccacaaagaagatgcagtcataccgacgagagtatgatcagttatcacaaaactat
aacagaacccagagcagtttggtccatgaggtagttcaggtcgcctcatcatactgccct
gtgttggaacgactcgccggggtactggcccatcttgacgtgattgtttccctcgctcat
tgctctgttcacgcaccagaagcatatgtccgacccaagattcatccccgaggcgagggc
caaacaaggctggtcggtgcccgccacccttgtatggaactacaggatgacgtgcaattc
atcaccaacgacgtcgaattcaccagagacaagtcgtcatttctcattatcactgggcct
aacatgggcggcaagtccacttacatccgccaagctggtgtgatcgccctaatggctcag
gtcggttgctttgtgccttgtaccgaggcagagctcaccatatttgattctatccttgct
cgtgttggcgccagtgactcccagctaaagggtgtatctacattcatggcagagatgctg
gagacagcaaacattctgaaatccgccacaaaagaatccctcatcattattgacgaactg
ggacgaggaacgtccacctacgatgggtttggtctcgcctgggctatttccgaacacatt
gtcaaagaaatcggctgctttgctatgtttgccacccatttccatgaacttaccgccctg
gcagagcagtaccctcaagtgcgcaaccttcacgtcacggcacacatcagtggaacagga
caggacaacagcaagcgagaagtgacccttttgtacaaggtcgaaccgggtatttgcgac
cagagtttcggcattcatgtggctgagctggtacgcttcccggacaaggtagttcgcatg
gcgaagcgcaaggccgatgaattggaggacttcactacaaagcacgaggacaataccctg
tcttacagcaaagaagatgttgaagagggcagcgcaatgctcaaacagctattggtacag
tggaaagagcaggtcaacaatggagagatgagccaggaagaaaaggtcgctaagctgaag
gagcttgtggcggctgactcgaagttgctggcgaatccctttttccagtccgtcaaggct
ttgtaa
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