Pochonia chlamydosporia: VFPPC_08240
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Entry
VFPPC_08240 CDS
T09407
Name
(RefSeq) RNA helicase (Dbp)
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_08240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_08240
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_08240
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_08240
Spliceosome [BR:
pchm03041
]
Complex A
U1 snRNP components
U1 related factors
VFPPC_08240
Complex B
VFPPC_08240
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
Pre-60S particles
Helicases
VFPPC_08240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Rod_N
Utp25_C
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
28850977
NCBI-ProteinID:
XP_018143806
UniProt:
A0A179FNY9
LinkDB
All DBs
Position
4:2692327..2694875
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AA seq
547 aa
AA seq
DB search
MSNYSGGRGGGHGGYGRDRSDRGDRNGYGGGYGGGRSNGFSNGHHGNSNGFGGGPGGGYG
GYGGGGDRMSNLGAGLQKQNWDLSALPKFEKSFYKESPEVADRSSAEVDAFRRKHQMTIA
GHDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT
LTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGV
PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI
IEQIRPDRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEK
RDRMIKHLEQVMENKENKILLFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLD
QFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFF
TTDNQKQARELVNVLQEAKQKIDPRLAEMARFGGGGGHRYGGWGRGRGGGGRANANNQPL
GRGNRRW
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactacagtggcggtcgcggcggcggtcacggaggctatggccgcgacagaagc
gatagaggtgaccgaaacggatacggcggtggctacggcggagggcgatctaatggcttc
agtaatggtcatcacggcaatagcaatggcttcggcggcggccctggaggcggctacggt
ggttacggaggaggtggcgatcgcatgagcaacctcggagctggtctgcagaagcaaaat
tgggatctttctgcactaccaaagtttgaaaagtctttctacaaggagagcccggaggtt
gccgacaggtcatcagcagaagttgacgcatttcgtcgtaaacatcaaatgacaatcgca
ggacatgacgtccctaagcctgtcgagacctttgacgaagctggattccctcgctacgtc
atggatgaggtaaaggcccaaggtttcccggctcctactgctatccagtcccaaggctgg
ccaatggctctttctggacgcgatgttgttggtattgccgaaacaggctccggaaaaacc
ttgacatactgccttcctgccattgttcatatcaacgcccagcctctccttgctcctggc
gatggacctattgtgcttgttcttgcccccacccgtgaactcgccgttcaaattcagcag
gaaatcaccaagtttggccgctcctctcgcattcgaaatacctgtgtttacggtggtgtc
cccaagggaccccagatccgcgacctctcccgaggtgtggaagtctgcattgccacacct
ggccgcttgatcgatatgctggaagccggaaagacgaatctgcgccgtgttacctatctt
gttctcgatgaggctgatcgcatgctcgacatgggttttgagccccaaattcgcaagatc
atcgaacagattcgacccgaccgacagactcttatgtactcggctacgtggcccaaggag
gttcgcgctatggctgccgatttccagaccgacttcatccaagtcaacatcgggtccatg
gacttgtccgccaaccacagaatcactcagattgtcgaagttgtatccgacatggaaaag
cgtgatcgcatgatcaagcacctggagcaagtcatggagaacaaagaaaacaagattctt
cttttcgttggaaccaagagggttgcagatgacattacgcgattcctccgccaagacggc
tggccagcattgtctattcatggcgacaagcaacaaaacgaacgtgactgggttctcgac
cagttcaagaccggaaaaagccccatcatggtggccacagacgttgcatctcgtggtatt
gatgttcgcaacatcacccatgtgttgaactacgactatcccaacaattcggaggattat
attcaccgaattggtcgtactggcagagctggtgcgaagggaacggccatcactttcttc
accactgacaatcaaaagcaggcccgcgagctcgtcaatgtcttgcaggaagccaagcaa
aagattgatcctcgccttgctgaaatggctcggttcggtggcggaggtggtcatcgatat
ggaggctgggggcgtggaagaggtggcggtggtagagccaatgccaacaaccaacctcta
ggcaggggcaaccgaaggtggtaa
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