Pochonia chlamydosporia: VFPPC_09144
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Entry
VFPPC_09144 CDS
T09407
Name
(RefSeq) NOT2 family protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_09144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_09144
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VFPPC_09144
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
VFPPC_09144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
28851724
NCBI-ProteinID:
XP_018140854
UniProt:
A0A179FCQ0
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Position
6:complement(1373051..1375178)
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AA seq
490 aa
AA seq
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MTGAVPQSLRGMPGNFGGQQQPQQPGRSVSSRLPNGKLGMSSNQRRAGLLDHTLRKTDCI
HFEKQQTMDQVGRLAEMYRWEELDSKIKLDRWGEIEFPSLSNNSQLNNANASSMWSSGSS
RNLSGPVQRNQSTPVSSQQGGQEDLFSSGSSRLPSHQSSFRFGNQGSMPSASQGQPSTVD
DFPPLNRAGNGDIGSDRSANLIPSPFGSQQPASGSQRGNGLLNALSANSRANEARSPPGV
VLNRGQEIKRPGADEDSRQKPISRDDGLGKSTVDDTSLNPLGAIGNEDSMAKLRDVKDSQ
APDGVDPLNGMSAVDKWGIKGLRTLMNNYPDYQAMVVGMDPITVGLDINSQEMISTQVYS
LFDDVAPRPTVNGSKFRLPECYNVTNVQPIESKIQNFNEETLFWIFYSCPADAKQQMAAV
ELHSRNWRWHKKHQIWLTKDEHMTPQILSPNHERGYYIVWDTESWRKDRRELTLFYGDLD
TTLSQPPAIS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaccggagcagtgccgcaatctctcagaggcatgcctggaaacttcggcggccagcaa
caacctcaacaaccaggacgatcggtatcgagtcggctaccgaatggaaaactaggtatg
agttcgaaccagcgacgtgctgggctcctcgatcacacgctcaggaagactgactgtatt
cacttcgaaaaacagcaaacaatggatcaggttgggcgtttggcggaaatgtaccgatgg
gaggagctggattccaaaatcaagctcgacagatggggggaaatcgaattcccatcgctg
tcaaacaactcacagcttaacaatgccaatgcttcgtcgatgtggtcgtctgggagctcc
cgaaacctgagtggcccggttcaacgaaatcagtccactccggtttcatctcagcaaggc
ggacaagaagatttgttttcttcaggctcatcacgtttgccttcgcaccagtcctcgttt
cgattcgggaaccaaggaagtatgccttcagcctcccaaggacaacctagtaccgttgac
gactttcctccactgaatagagcaggaaatggggatattgggtcagatcgaagtgcgaac
ctcattccctcaccatttggatcacaacaaccagcgtcagggtcgcagaggggcaatggt
ctgctgaatgcattgtccgcgaacagtagggcaaacgaagctcggtcaccccctggggtt
gtattaaaccgggggcaagagatcaaacgacctggcgccgatgaggatagcaggcaaaaa
cctatatcgcgagacgatgggctaggcaaatccactgtggatgacacgagtctaaatccc
ttgggcgcaattggaaacgaagactcgatggcaaagctgagagatgtgaaggacagccaa
gcccccgacggcgtcgacccccttaatgggatgagcgcagttgacaaatggggaatcaag
ggcttgcggacgttgatgaacaactacccagactaccaggccatggttgttggcatggac
cctatcacggttgggctggacattaactcgcaagagatgatctcaacacaagtatactcg
ctattcgacgatgtggctccgcgaccgacagtcaatggtagcaagttccgccttcccgag
tgctacaacgtaaccaacgtccagccaatcgagagcaaaatacaaaacttcaatgaagaa
acgttattttggatcttctacagctgccctgcagatgccaagcagcaaatggcggcggta
gaactgcattctcgaaattggagatggcacaagaaacatcagatttggctcactaaggat
gaacacatgacaccgcagattttgagccccaatcatgaacggggttactacatcgtgtgg
gacactgagagctggcgaaaagataggcgagagcttactctgttctacggcgatttggat
accacacttagccaacccccagcaatatcttaa
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