Pochonia chlamydosporia: VFPPC_09824
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Entry
VFPPC_09824 CDS
T09407
Name
(RefSeq) RNA polymerase II mediator complex subunit Nut1
KO
K15147
mediator of RNA polymerase II transcription subunit 5
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_09824
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Middle
VFPPC_09824
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med5
Motif
Other DBs
NCBI-GeneID:
28852287
NCBI-ProteinID:
XP_018141080
UniProt:
A0A179FDW6
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Position
6:<710172..>713597
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AA seq
1044 aa
AA seq
DB search
MDQTSRPRRAVRESMDYWSRFVDKCISKRLSTEDFDEFVRLIQAKHPLPPFLIAFLFLRP
MPDNDVSLDPRIPPYIQVLSRLGYIDAPSILKVLYKFSSLHTQLKASTQNGTQSESKDNK
DSHDSNGKDKKQSPRRWRSSSWAEEVMFYHVIKTIVEGTAFRDSRAVLELVQVISKWMEL
FTSVSSAFATDVMGELQNSQARDDMDVARAAFVPLLLRLVEVPALVKAISNPNVKAIRQQ
LSNSLAGFIHTLQPAPGFVERLDIFRTETLDRLDPIDKRSQAAANAAMDELLETTVGVDN
FAIPDLLITNTRSALYVYLNATLVGRPLIDDNVLISYLQNRYQGATQPSAIELIIASFDI
LANAVFRNEGPRDAHLLKSFLVNKVPLLLCHLFSHEPTFDTNSTEYCITAALNQVDTSVF
PTASLMFDESRSNNPYTESVREDFCTACALHGLVQREHVERILGETSMSYEPSLEKYSKE
KLVQDCLADAEKVQGLIRELEKMDGNVGAVCQALVEVMRQLCNNKETMSLKLLCSQLAQK
PQTLDILLLFEKLPTILDPLCQLLDNWRYEEDQGEYQPIYEEFGSILLLVLAFAYRYNLT
AADIGIMSPDSSIAKILSRAHISRERDELTEQEKGHMSGWIHGLFDTESGGLGDDLMSSC
PPQDFYLLVASLFQNIVVAYTYGYLNDETLKGGVEYLVDTFLLPSLVPALRFLADYLWVE
QKEQKAVIKVLQLILLPSSISGEASTMLSSVRNLVAKPLEHSLRTYQRQDPKNQDIEPLL
RALKDSLPLSRRTGGADHNELESWTNASSNGLAGALRHTVQGLFQWSFHQATGNSLPTSY
THRQLIAAVKIMGAKRALRLLLDEVRTHSEAGTGPLVYDVVGAMICAPNVTNELPPNSQM
MDPAGNLPPAIQQPLTLREALRFEAESCRKLQKTDPVLAEVVVRLHRRVEAHLVMPQAQG
MLEAPGIQLDLTAGPGGLGDVGAMAAAAGVGGDGMGVDGLDMGMGGPGSAGGLDTTSDGD
LFGGLDTSDMDMFAWGDSMDLSGN
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggaccagacctccaggccgcgtcgcgcagtacgcgaatccatggattactggtcacgc
tttgtcgacaagtgtatatccaaacgcctcagcacggaagactttgacgaattcgtgcgt
ctcatccaggcgaagcacccgttgcccccatttctcatcgcctttttatttctgcgaccg
atgcccgataacgacgtgagcctcgaccctcgaataccgccgtatatccaggtcctcagc
aggctaggctatatcgatgcgccgtccatattgaaagtgctgtacaaattctcgtccctg
cacacacagctcaaagcttctactcaaaacggaacccagtccgagagcaaggacaacaag
gacagccatgattcgaatggcaaagataaaaaacagagcccgcgacgctggaggagctcg
tcttgggcggaggaagtcatgttttaccacgttattaaaactatcgtggagggaactgcg
ttccgagattcgcgcgccgtactggaacttgtccaagtcatttctaagtggatggaactc
ttcacctcagtgtctagcgcttttgcgactgatgtaatgggtgaactgcagaattcgcag
gcccgtgatgatatggatgttgctcgggctgcctttgtcccgctcttgttgcggttggtg
gaggttcccgcgcttgtcaaagccatcagcaaccccaatgtcaaagcgatacgtcagcag
ctgtcgaacagcttggctgggttcattcacacactacagccggctccgggatttgtggaa
cgattagacatcttccgcacggaaactttggatagactggatccaattgataaaaggagc
caggcagctgcgaatgccgccatggacgagctgctggagacgaccgttggtgtagacaat
tttgccattccggacctgctcatcaccaacaccagatcagcattatatgtatatttaaac
gcaacgcttgtgggacggccattgattgacgataatgtattgatatcatatttgcaaaac
cggtatcagggcgcaacgcaaccaagcgctattgagctaattatagcatcatttgacatt
cttgccaatgcggtattccgcaacgaggggcccagagatgcacatctgctgaagtcgttc
ctggtgaacaaagtaccactgctcctgtgtcacctcttctcacacgaacccacatttgac
accaactctacggaatactgcatcactgcggctctgaaccaggtcgacacgagtgttttc
cccaccgcctcgctcatgtttgacgagtcgagaagcaacaacccctataccgaaagtgtc
cgagaggacttttgtacggcatgtgctcttcatggtttggtgcaaagggagcacgtggag
agaatactgggcgaaacgtccatgtcctatgagccctccctggaaaagtattccaaggag
aagcttgttcaggattgtttggcagacgccgaaaaggttcagggattaatacgcgagttg
gagaagatggatggcaacgttggcgctgtttgccaggcactagtggaagtaatgcgccaa
ctctgcaacaacaaggaaacgatgtcactaaagctcctgtgcagccagctggcacaaaag
cctcagacgttggatattctgctactctttgaaaagctgcctactattttggatccgttg
tgccagctcctggacaactggcgatacgaagaggatcaaggcgaataccaacccatctac
gaagaatttggctccatactccttctggtgttggcatttgcataccgctataatctaacc
gcggctgacattggcataatgtctccagattctagtattgccaagattctgagcagggca
catataagccgcgagagggatgagctgactgaacaggaaaagggccacatgagcggttgg
attcatggtctcttcgacactgaatccggtgggttgggggatgatctgatgtcttcgtgt
ccaccgcaagacttttatctgctcgtggcatctctgtttcaaaacattgtggtagcctac
acatacggatatctcaacgacgaaaccctcaaagggggtgtagaataccttgtagacacc
ttcttgctaccttcactcgtgccggcacttcgtttcctagcagactacctgtgggtagag
caaaaggagcaaaaagccgtcatcaaagtcctgcagctcatcttgctgccgagctccatt
tccggcgaggcaagcactatgctatcatccgtgagaaacctcgtcgcgaagcccctggag
cactccctacggacatatcagcgtcaggaccccaagaaccaggacatcgagccgctgctg
cgagcgctcaaggacagcctgcccctctcacgacgaaccggcggcgcagaccacaacgaa
ctcgaatcgtggaccaacgcctccagcaacggcctcgccggcgctttgcgacacaccgtc
cagggcctcttccaatggagttttcaccaagccaccggcaacagcctgcccacgtcctac
acacacagacaactaatagcagccgtaaaaatcatgggagcaaagcgcgcgctccgcctc
ctcctcgacgaagtgcgcacgcactccgaagccggcaccggccccctggtctacgacgtc
gtcggcgccatgatctgcgcccccaacgtcaccaacgaactcccgccaaacagccagatg
atggacccggccggcaacctcccgcctgccatacagcagcccctcaccctccgcgaggct
ctgcgcttcgaagccgaaagctgtcgcaagctgcaaaagacggaccccgtcctggcggag
gttgtcgtccgtctgcaccgccgtgtggaagcgcacttggtcatgccgcaggcgcagggg
atgctcgaggcaccgggcattcagctcgatcttacggctgggccaggcgggctcggtgac
gttggtgcgatggcggcggcggcgggagtgggaggcgacggcatgggggttgatggtctg
gatatgggtatgggtggtccggggagcgctggcggcttggatacgactagtgatggggat
ttgtttggcgggctggatactagtgatatggatatgtttgcgtggggggatagtatggat
ttgagtgggaattga
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integrated database retrieval system
