Pochonia chlamydosporia: VFPPC_10964
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Entry
VFPPC_10964 CDS
T09407
Name
(RefSeq) exosome complex exonuclease RRP41
KO
K11600
exosome complex component RRP41
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_10964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_10964
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VFPPC_10964
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
VFPPC_10964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
SCO4226-like
Motif
Other DBs
NCBI-GeneID:
28853242
NCBI-ProteinID:
XP_018136859
UniProt:
A0A179F0F4
LinkDB
All DBs
Position
Unknown
AA seq
272 aa
AA seq
DB search
MPLDTSTYSLALLRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQN
AQTQAQRRGGQATGRDNASISVNVVIAGFSSVDRKKRGRNDKRIQEIEITIAKALSSTVH
THLFPHSTITISLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGSTSSYAAGD
DSADPLLDLNNQEEQELPFLTVASLGDSDRVVALVCESRVQVSRLEGMLVVGLDGCKQVK
MFLDKTIKDKGVKMIREGAVQRSDTMAMELDE
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcctctagacacatcaacctactccttagcactccttcgcgtagacggccgacgctgg
aacgaactccgtcgcctccacgcccaaatccgcacacaagatgccgccgacggatcgtca
tacttcgagatgggccacacaaaagtaatgtgtgtcgtgaccggcccttcagaacaaaat
gcacagacgcaggcgcagcgacgaggtggtcaggcaacggggcgtgacaacgcttccatt
agtgtgaatgtggttattgctgggttttcgagcgtggatcgcaagaagcgcggacgaaac
gacaagcgaattcaagagattgaaatcaccattgccaaggcactgtcttcaactgtccac
acgcacctgttcccgcattccaccattacgatatcactacacgtcctctcgcaagacgga
tctctcctcgctgccctaattaatgccgcaactcttgccgtcattgacgctggtattccg
atgaccgattacattgcggcctgcacagccgggtcaacatcttcctatgctgctggcgat
gactctgcggacccgctcctcgaccttaacaatcaagaggagcaggagctgccgtttctc
accgtagcgtcgctgggggatagtgaccgcgttgtggccctggtttgcgagagccgcgtc
caggtcagtcgtctggaaggtatgcttgtggttggcttggatgggtgcaaacaggtcaag
atgtttctcgataagaccatcaaagataagggagtcaagatgattagagaaggggctgtg
caacgaagcgataccatggccatggagctggacgagtag
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