KEGG   Pochonia chlamydosporia: VFPPC_12760
Entry
VFPPC_12760       CDS       T09407                                 
Name
(RefSeq) U6 snRNA-associated protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03018  RNA degradation
pchm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VFPPC_12760
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VFPPC_12760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_12760
   03041 Spliceosome [BR:pchm03041]
    VFPPC_12760
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VFPPC_12760
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VFPPC_12760
Spliceosome [BR:pchm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    VFPPC_12760
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 28854531
NCBI-ProteinID: XP_018148441
UniProt: A0A179G4G6
LinkDB
Position
1:complement(<1497696..>1498099)
AA seq 86 aa
MSSAENGNISQGEGKDPSSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEY
VNGKKRRDYGDAFVRGNNVMYISADS
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcatcagcagagaacggcaacatctcacaaggcgagggtaaggacccgtccagcttc
ctgagcgacatcatcggcaatcccgtcatcgtgaagctcaactctggcgtcgtctacaag
ggcgaactgcaatccgtagacggatacatgaacattgcgctggaaaagacggaggagtat
gtcaacggcaagaagcgcagggactatggcgatgcgtttgtgcgaggaaataatgtaatg
tacatttcggcagattcataa

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