Pochonia chlamydosporia: VFPPC_12968
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Entry
VFPPC_12968 CDS
T09407
Name
(RefSeq) RNA recognition motif domain-containing protein
KO
K12881
THO complex subunit 4
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03013
Nucleocytoplasmic transport
pchm03015
mRNA surveillance pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_12968
09122 Translation
03013 Nucleocytoplasmic transport
VFPPC_12968
03015 mRNA surveillance pathway
VFPPC_12968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_12968
03041 Spliceosome [BR:
pchm03041
]
VFPPC_12968
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
VFPPC_12968
TREX complex
VFPPC_12968
Spliceosome [BR:
pchm03041
]
Complex C
Other components
EJC/TREX
VFPPC_12968
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
VFPPC_12968
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
28854739
NCBI-ProteinID:
XP_018149352
UniProt:
A0A179G7X2
LinkDB
All DBs
Position
1:<3990830..>3992677
Genome browser
AA seq
251 aa
AA seq
DB search
MSSKLDKPLDDIVSAKRQSARNRRSSQRRSTGPKVAAPVGGIQKSSKPARGSAAKPVPAK
AAAAHGESKVIVSNLPKDVSEQQIKEYFIQAVGPIKRIDLVYGPNSVSRGIANVTFHKAD
GASKAFQKLNGLLVDNRPIKIEIVVGAAQADKVMPPVKSLADRATQPKAQPKSAASGKGA
TGGVGKAGNAKAANKKRRGRSARPAKKTAEELDSEMTDYFKNNPDGAAAGAGSGAAPAGG
AGDAPMEDEIM
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaagctcgacaagcctcttgacgacatcgtctcggccaagcgccagtctgcc
cgcaatcgtcgctcctctcagcgacgctctaccggccccaaggtcgctgcccccgttggt
ggcattcaaaagtcttccaagccggctcgcggctcggcggccaagcccgttcctgccaaa
gccgctgctgcccatggagagagcaaagtcatcgtcagcaatctgcccaaggacgtctcg
gagcagcagatcaaggaatactttatccaagccgttggacccatcaagagaatcgatctc
gtctacggccccaattccgtcagccgcggcattgccaatgtcactttccacaaggctgac
ggcgccagcaaggcttttcagaagctgaatggccttcttgtcgataaccgacccatcaag
atcgaaattgtagtcggcgctgctcaggctgacaaggtcatgccacccgttaagtccttg
gccgaccgagctactcaacccaaggctcagcccaagtcggctgcttccggcaagggtgcc
accggcggagttggcaaggctggtaatgccaaggcagccaacaagaagcgccgtggccga
agtgcccgtcctgctaagaagacggccgaggaattggattccgagatgacggactacttc
aagaacaaccccgatggtgcggccgccggagctggcagcggtgctgcccctgctggtggt
gctggggatgctcccatggaagatgagattatgtaa
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