Pochonia chlamydosporia: VFPPC_12978
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Entry
VFPPC_12978 CDS
T09407
Name
(RefSeq) nuclear envelope protein
KO
K14315
nucleoporin NDC1
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VFPPC_12978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_12978
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
VFPPC_12978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
28854749
NCBI-ProteinID:
XP_018149395
UniProt:
A0A179G642
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Position
1:4112463..4114576
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AA seq
662 aa
AA seq
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MAGAPVRRAPYKDTLQPALHRRFSSTAILLLAVSYLEALLLANWGSYFWSWFPIGPAGFR
TLLIFSCGLSILILRIAHYHVGLKTTESGLQTLNSSLLSLSTYETGFWYSVSSFLFCPIF
LFSMSESSNLQWIIYFGGSRARLNERPLFLACYLGVCALLQTVAHYKIDVDRLDFGISKR
QTKTQHKALSVLPRSFQIVLLQLPGTLAGCAQQAISALLLCLILYYFILRGFAWGWALTF
LRPFYSLPKTSIVPSTWPTDIYLLFRCAYAGTLMNFIWATGNTAFSVFMVREPLKNGNPL
TSESKDPNGSLLNGLKSKKLSIKSFAMWELAIIAQDFEARRLAIFCDIDRKDGPMWSQVY
AICMELLKQMETRIDEYGKPPPSAVPQPNPPAEVKQRTSAPLRQDAIFTKKGETSGLLGG
VEKAWDQIARAPGSSPVSELSPLAKKTWKDAKDRVLTKEQQEALSPEHLRSEFGNWTTNL
MKIEYIGGLFRHDFRTRVAGVVMGTPYAEPTLYTNAVQALCLLAVHSLAEDQFGNVHRDV
PSIIRTLTAVIRKVENLKQQFPLHWTDPSGNRESPEVDQILDTLRTGLEQVVSKFEPYSS
DLRLSLGDLRLAKESFARPEKEVPAPKEKEPVVQSKPIEGKKAESSRAHRREYKRVEMEQ
VR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgctccagtgcgaagagctccttataaggacactttgcagcctgctttgcat
aggcgcttttcttcgacagctattcttttgttggctgtgtcgtatctggaagctctcctc
ctggccaactggggctcatatttctggtcctggttcccaattggacctgccggtttccga
acactcctcatattctcatgcggcctctccatcctcatcctgcgaatcgcacattaccat
gtcggcctgaaaacgacggaatcggggctgcaaactctcaactcgtcactacttagcctg
tccacatacgaaactggcttctggtacagcgtctcgagcttcttgttctgccccatcttc
ctcttttccatgtcggaatcctcgaacttgcagtggataatctattttggcggcagccga
gcacgattgaacgagcgaccgttgtttcttgcttgctatctgggagtctgtgccctgttg
caaactgtcgctcactacaaaatcgacgttgacagattggatttcggcatttccaagcgg
cagactaaaacccagcacaaggcgctcagcgttttgccacgctcctttcagattgtcctc
cttcagcttcctgggaccctggcaggctgtgcacaacaagccatctcagctttgctgctg
tgtctgattctatactacttcatcctgcggggcttcgcatggggttgggctttgacgttc
cttcgacctttttacagtctacccaagaccagcatagtcccatcgacatggccgactgat
atatatctactgttccggtgcgcttatgccggcacattgatgaactttatatgggctacc
ggaaacacagccttctccgtcttcatggtcagagagcccttgaagaacggcaacccttta
acgtcggagtcgaaggatccaaatggctctctgctgaatggactaaagagcaagaagctc
tccatcaagtctttcgcaatgtgggagcttgccatcatcgctcaagatttcgaggctaga
cgactggcgatcttttgtgatattgaccgcaaagacggcccgatgtggtcgcaagtctat
gctatctgcatggaactcctaaaacaaatggagacccgtattgatgagtacggaaagccg
ccgccctccgccgtcccgcaaccaaatcctcctgccgaggtaaagcaacgtacgtcagct
ccgcttcggcaagatgccattttcacgaagaaaggcgagacatctgggctgctcggcggc
gtggagaaggcctgggatcagatcgctcgagctcctggttcatcgcctgtatcggagctc
agtccgttggcgaaaaagacatggaaggatgccaaggacagagtgctcaccaaggagcag
caggaggcattatctcctgagcatctacggagtgagtttggcaactggacgacgaatctc
atgaaaatcgagtacattggaggtttgttccgacacgattttcgtactcgagttgccggc
gttgtcatggggactccctacgctgagcctactctctacaccaatgctgtacaagctctt
tgccttctggcggttcacagtcttgccgaggatcagtttggaaacgttcatagggatgtt
cccagcatcatacgaactctaactgcggtgatccgaaaggttgagaacctcaagcaacag
tttcctttgcactggacagacccaagtggcaatagagagtcaccagaagtggaccagatc
cttgatacattaaggactggcttggagcaggtcgtttcaaaatttgagccctacagcagt
gacttaaggctctctcttggggatcttcgcttggcaaaggaatccttcgcgcggcctgag
aaggaggttcctgccccgaaagaaaaggagcccgttgtacaatcaaaacccatagaggga
aagaaggcagagtcgtcaagagcgcaccggcgggagtataaaagggtggaaatggaacaa
gtacggtaa
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