Pochonia chlamydosporia: VFPPC_12982
Help
Entry
VFPPC_12982 CDS
T09407
Name
(RefSeq) Sm ribonucleoprotein (LSM)-related domain-containing protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_12982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_12982
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VFPPC_12982
mRNA degradation factors
5'-3' decay
Lsm complex
VFPPC_12982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DJR-like_dom
Hfq
Motif
Other DBs
NCBI-GeneID:
28854753
NCBI-ProteinID:
XP_018149406
UniProt:
A0A179G7D7
LinkDB
All DBs
Position
1:complement(<4147174..>4147860)
Genome browser
AA seq
176 aa
AA seq
DB search
MENLTISDAPQQPGSAPPPGARGPPQGPPQLPPQMFTTAAQLLDLTDKKLMVVLRDGRKL
IGVLRSWDQFANLVLQSTTERIFAFKPGTDPSAPEGYYADISHGIFLVRGENVLLLGEID
LDKDDDPPPGFEPADLELVKRLADEKKAQDKAKDKKRLQKLATMGFEGENLGEIVF
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctcaccatctcagatgcccctcaacaaccgggatcggcgcctcctcctgga
gctcgcggccctccgcaaggccctccacagctgccgccgcagatgttcacaacggccgcc
caacttctcgacctaacggataagaagctcatggttgtcctgcgagacggaagaaaacta
atcggagtactaagaagttgggatcaattcgcaaacctagtcctccaatcaacaacagaa
agaatattcgctttcaaacctggcaccgacccctctgctcccgagggttactacgccgac
atatcgcacggcatcttcctcgtccgtggtgagaatgtgcttcttctaggcgaaattgac
ctcgacaaggacgatgatccgcctcctggattcgaaccagctgatttggagctcgtcaag
aggctggccgacgagaagaaggctcaagacaaggccaaggacaagaagagactgcagaag
ctggctacgatgggttttgagggtgaaaacctaggagagattgtattttag
DBGET
integrated database retrieval system
