Pochonia chlamydosporia: VFPPC_13306
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Entry
VFPPC_13306 CDS
T09407
Name
(RefSeq) RNA recognition motif domain-containing protein
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_13306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_13306
Spliceosome [BR:
pchm03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
VFPPC_13306
Complex B
VFPPC_13306
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
U1snRNP70_N
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
28855077
NCBI-ProteinID:
XP_018146668
UniProt:
A0A179FYE2
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All DBs
Position
2:<1689766..>1691305
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AA seq
386 aa
AA seq
DB search
MTDKLPPNLLALFAPRPPLRWVEPPDFAPEKRKTAPIDGVASFLPELQKYKETDVYNPTE
SWLEARDRKKHEKKEAVQTLLTDGPKNYTPNEDPNIRGDAFKTLIVARLSYDADERDLER
EFGRFGPIERIRIITDTHAHEKPNKKKKAHRGYAFVVFEREKDMRAALDSCDGIRIKDRR
IKVDVERGRTVKGWKPRRLGGGLGGRGYTKTAPARPGGGPGGGFGGGGGFRGGFKGFDGG
RGRGGFRGGFGGRGGGFRGGDGPRGGDRNGFGAPSGAPSGPGGDRRNGDRGFGGGFESRG
GRSFDDRPGGGYRDGGRRTGGNMEPIGRRDGGFRDRDRDRDRDRDRDRDRDRDRGGRDYD
RPRDDDNRKRGYEGGGYEDPRKLRRY
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaagctcccgcccaatttgctggcgctcttcgcgccgcgaccccccctgcga
tgggtagagcctcctgactttgcgcctgagaagagaaaaactgcacccattgatggtgtc
gcctcgttcttgccagagcttcagaaatacaaggaaacggatgtgtacaaccccacagaa
agttggctcgaggcgagggacagaaagaagcatgagaagaaggaagctgtccagaccttg
cttacggatgggcctaagaattacactcctaacgaggatccgaacattcgcggcgatgcg
ttcaagactctgattgttgcgcgactgagctacgacgctgatgaacgggacttggaacgg
gagtttggccggtttggcccaattgagcgcattcgtattattactgatactcacgcgcac
gaaaaacccaacaagaagaagaaggcccaccgaggatatgcctttgtcgtatttgagaga
gagaaagatatgagagctgctttggattcctgtgatggcattcgcatcaaagacagacgc
attaaagtagatgtcgaaagaggccgaacagttaagggatggaagccgcgtagattaggc
ggtggcctcggcggacgcggctacaccaaaacagcacctgctcgccctggtggtggccct
ggaggcggcttcggcggtggtggtggcttccgtggtgggtttaagggattcgacggtggc
cgaggccgaggcggcttccgcggcgggtttggtggtcgcggaggaggcttcagaggaggc
gacggtcctcgcggcggcgacagaaacggcttcggggcaccaagcggagctccatccggc
ccaggaggcgaccgaaggaacggtgaccgcggctttggcggtgggtttgagtccagaggt
ggacgatcgtttgatgacagacccggcggtggttaccgtgatggcggtcgtcgtaccggc
ggcaacatggaacccattggacgcagagacggtgggtttcgcgatagggatcgtgatcgt
gaccgtgaccgtgatcgggaccgcgacagggacagggaccgaggtggtcgtgattacgac
aggccgcgtgatgatgataaccggaaacgaggatatgaagggggaggctacgaggatccc
agaaaactacgacggtactaa
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