KEGG   Pochonia chlamydosporia: VFPPC_13904
Entry
VFPPC_13904       CDS       T09407                                 
Name
(RefSeq) spliceosome-associated protein 49
  KO
K12831  splicing factor 3B subunit 4
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VFPPC_13904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pchm03041]
    VFPPC_13904
Spliceosome [BR:pchm03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    VFPPC_13904
 Complex B
    VFPPC_13904
 Complex C
   U2 SnRNP specific factors
    VFPPC_13904
SSDB
Motif
Pfam: RRM_1 OB_RNB RRM_5 RRM_7 RBD_DEAH11 RRM_occluded
Other DBs
NCBI-GeneID: 28855670
NCBI-ProteinID: XP_018141843
UniProt: A0A179FHL0
LinkDB
Position
5:1609897..1611106
AA seq 384 aa
MAQNRHWEQDKDATIYIGNIDERATSTTIYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVE
FRTPSDAEYAANVMNGIKLFGKSLRVNKASADKQKGADIGAELFVGNLDPMADEKLLYDT
FSRFGPLLSLPKVARDDSGNSKGFGFVSFGDFESSDAAVANLDGQYLLSKDISVQYAFKK
DGKGERHGDEAERELAKQAKKRNIVPEAQALPAFMQQSSQMQTQTPQAQTQTQSQPAMPA
GFDPSMIPPPAGLGGHPIPQMAHHHHAPPQQQQQPPQPTFHRNPPYNTNAPPQPRPSVPL
PPPPTGLPARPPQSQNYTNPADFHPGAFRPPSGSPNPQGFPVAPPPGFPAAPPGAPGQQG
PPGAAPPGFMPPPGFQPPPGFGRR
NT seq 1155 nt   +upstreamnt  +downstreamnt
atggcacaaaaccggcactgggaacaggacaaagacgcaacaatctacataggcaacatc
gacgaacgcgccacctccaccacaatctacgaaatcatgctccaaatgggccccatccac
aacatccacatgccgcgcgaccgcgtcacccagaaccaccaaggcttcgggttcgtcgag
ttccggaccccctccgacgccgaatacgccgccaacgtgatgaacggcatcaaactgttc
ggcaagtccctccgcgtgaacaaggcctcggccgacaagcaaaagggcgcagacatcggc
gcggagctcttcgtcggcaacctcgaccccatggccgacgagaagctgctgtacgacacg
ttttcccgcttcggcccgctgctcagcctgcccaaggtggcgcgcgacgacagcggaaac
agcaagggcttcgggttcgtcagtttcggcgactttgagagcagcgacgcggcggtcgcg
aatttggacgggcagtacctgctcagcaaggatattagcgtgcagtacgcattcaagaag
gacggcaagggggagaggcacggcgacgaggcggagagggagctggctaagcaggctaag
aagaggaatatcgtgcccgaggcgcaggccctgccggcttttatgcagcagtcttcgcag
atgcagacgcagacgccgcaggcgcagacgcaaacgcagagccaacctgcgatgccggcg
ggttttgatccgtccatgattcctccgccagcaggattgggaggccacccgattccccag
atggcgcatcatcatcatgcgccgccgcagcagcagcagcagccgccccagccaaccttt
caccgcaatccgccgtataatacaaacgctcctcctcagcctcgaccctccgttccgcta
cctcctccgcctacggggctgcctgcccgtccgccacagagccaaaactacactaatccc
gctgactttcaccccggtgcgtttcgaccaccctcgggttcgccaaatcctcagggcttt
cccgtcgcgccgcctccaggattccctgccgcaccgcccggagcccctggacagcaaggg
ccgccgggtgcggcaccacctgggtttatgccaccgcctggcttccagcctcctccgggc
tttgggcgtcgttag

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