Pochonia chlamydosporia: VFPPC_14011
Help
Entry
VFPPC_14011 CDS
T09407
Name
(RefSeq) eukaryotic initiation factor 4A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03013
Nucleocytoplasmic transport
pchm03015
mRNA surveillance pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_14011
09122 Translation
03013 Nucleocytoplasmic transport
VFPPC_14011
03015 mRNA surveillance pathway
VFPPC_14011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_14011
03041 Spliceosome [BR:
pchm03041
]
VFPPC_14011
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_14011
03012 Translation factors [BR:
pchm03012
]
VFPPC_14011
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_14011
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
VFPPC_14011
mRNA cycle factors
Stress granule specific factors
VFPPC_14011
Spliceosome [BR:
pchm03041
]
Complex C
Other components
EJC/TREX
VFPPC_14011
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
90S particles
Helicases
VFPPC_14011
Translation factors [BR:
pchm03012
]
Eukaryotic type
Initiation factors
eIF-4
VFPPC_14011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
28855776
NCBI-ProteinID:
XP_018142476
UniProt:
A0A179FI00
LinkDB
All DBs
Position
5:<3347059..>3348377
Genome browser
AA seq
402 aa
AA seq
DB search
MAEGAGGIDRKADERMEFSTSKEVTVHPTFESMSLKENLLRGIYAYGYESPSAVQSRAIV
QVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALG
DYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEAD
ELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEG
LKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGD
MPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR
FGRKGVAINFVTTEDVRILRDIELYYSTQIDEMPMNVADLIA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggcgccggaggaattgaccgcaaggcggacgagaggatggagttctccacc
tctaaagaagtcaccgtccacccaactttcgaatccatgtctttgaaggagaaccttctt
cgcggtatctatgcgtacggttacgaatctccgtcggctgttcaatcccgagccatcgtg
caagtatgcaaaggacgcgacaccatcgcgcaagcacagtctggtaccggcaaaacggcg
accttttcgatcagtatgctgcaggttattgataccgctgtgcgcgaaacccaggcctta
gtgctttcgcccaccagagagcttgctactcaaatccagtccgtcgttatggcgctcggc
gactacatgaatgtgcaatgtcacgcttgtattggtggtaccaatgttggtgaagatatc
cgcaagcttgactacggccagcacatcgtttccggtacccctggacgtgttgcagacatg
attcgaagacgacacctgcgcacaagacacatcaagatgctggtgctggatgaagctgat
gaactgctcaacaagggttttagggaacaaatttacgatgtgtatcgatatttgccccca
gccacccaggtcgtcgtagtcagcgccaccctgccgtacgatgtattggacatgaccaca
aagttcatgactgatccggtcagaattctcgtcaagcgtgatgagttgaccctcgaaggt
ctgaaacaatacttcattgctgttgagaaggaggattggaagtttgataccctgtgcgat
ttgtacgacaccttgaccatcacgcaagctgtcatcttttgcaacacccgtcgcaaggtt
gattggctgaccgacaagatgcgcgaggccaacttcactgtcagcagcatgcacggcgac
atgccccaaaaggagcgagacagcattatgcaggatttccgacagggcaacagtcgagtt
cttatttcgacggatgtttgggcccgtggtattgatgtgcaacaagtcagtttggttatc
aactacgacttacccagcaaccgtgagaactacatccaccgtatcggtcgaagtggtcga
ttcggtcgcaagggtgttgctatcaactttgtcactacggaagatgtgcgcattctgcgt
gatattgagttgtactactcaacccaaatcgatgaaatgcccatgaacgtcgcagatctt
atcgcttaa
DBGET
integrated database retrieval system
