Pochonia chlamydosporia: VFPPC_14103
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Entry
VFPPC_14103 CDS
T09407
Name
(RefSeq) U6 snRNA-associated protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03018
RNA degradation
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_14103
09123 Folding, sorting and degradation
03018 RNA degradation
VFPPC_14103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_14103
03041 Spliceosome [BR:
pchm03041
]
VFPPC_14103
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VFPPC_14103
mRNA degradation factors
5'-3' decay
Lsm complex
VFPPC_14103
Spliceosome [BR:
pchm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
VFPPC_14103
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
28855868
NCBI-ProteinID:
XP_018138498
UniProt:
A0A179F5H8
LinkDB
All DBs
Position
Unknown
AA seq
131 aa
AA seq
DB search
MADRPAHRGGRGGGGSRGGRGGGRGGRDGGRDGGDKGEKPKKENILDLAKYMDKEITVKF
NGGREVTGTLKGYDALMNLVLDDVKETVRDEEGNESTRPLGLVVARGTLLVVITPVDGSE
EIANPFAAAEE
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atggccgatagacccgcacaccgaggtggaagaggaggaggaggttctcgtggtggacga
ggcggcggccgtggtggcagggacggtggtcgcgatggcggcgacaagggcgagaagccg
aagaaggagaacatcctcgacttggccaagtacatggacaaggagatcaccgtcaagttc
aatggcggacgagaagtcacgggtacgctaaaggggtacgatgcgctcatgaacctggtg
ctggacgatgtgaaggagactgttcgagacgaggaaggaaacgagtccactcggccgctg
ggcctggttgtcgcgcgtggcactcttctcgtcgtcatcactcccgttgatggcagcgaa
gaaatcgccaacccttttgcggctgcagaggagtag
DBGET
integrated database retrieval system