KEGG   Pochonia chlamydosporia: VFPPC_14103
Entry
VFPPC_14103       CDS       T09407                                 
Name
(RefSeq) U6 snRNA-associated protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03018  RNA degradation
pchm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VFPPC_14103
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VFPPC_14103
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_14103
   03041 Spliceosome [BR:pchm03041]
    VFPPC_14103
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VFPPC_14103
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VFPPC_14103
Spliceosome [BR:pchm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    VFPPC_14103
SSDB
Motif
Pfam: LSM RimP_C FoP_duplication
Other DBs
NCBI-GeneID: 28855868
NCBI-ProteinID: XP_018138498
UniProt: A0A179F5H8
LinkDB
Position
Unknown
AA seq 131 aa
MADRPAHRGGRGGGGSRGGRGGGRGGRDGGRDGGDKGEKPKKENILDLAKYMDKEITVKF
NGGREVTGTLKGYDALMNLVLDDVKETVRDEEGNESTRPLGLVVARGTLLVVITPVDGSE
EIANPFAAAEE
NT seq 396 nt   +upstreamnt  +downstreamnt
atggccgatagacccgcacaccgaggtggaagaggaggaggaggttctcgtggtggacga
ggcggcggccgtggtggcagggacggtggtcgcgatggcggcgacaagggcgagaagccg
aagaaggagaacatcctcgacttggccaagtacatggacaaggagatcaccgtcaagttc
aatggcggacgagaagtcacgggtacgctaaaggggtacgatgcgctcatgaacctggtg
ctggacgatgtgaaggagactgttcgagacgaggaaggaaacgagtccactcggccgctg
ggcctggttgtcgcgcgtggcactcttctcgtcgtcatcactcccgttgatggcagcgaa
gaaatcgccaacccttttgcggctgcagaggagtag

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