Pochonia chlamydosporia: VFPPC_15119
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Entry
VFPPC_15119 CDS
T09407
Name
(RefSeq) U3 small nucleolar RNA-associated protein
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VFPPC_15119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_15119
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VFPPC_15119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_HPS5
DUF2583
Motif
Other DBs
NCBI-GeneID:
28856866
NCBI-ProteinID:
XP_018148475
UniProt:
A0A179G3E4
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Position
1:complement(1584631..1586379)
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AA seq
582 aa
AA seq
DB search
MANKADEWASDQESSESELSSDAGSDNLPSAKKTVAIFDKDSDEEELERLVLGNKAGFRE
NLFKNGILDDENDADTDFQMGDAGAGGLEDVDDADLFVLDTGASGASKSLVTAPKAEQGD
APAWEDSDDDRLVVSLAGTNRLRKLRMTEADDLVTGSEYSRRLRQQFLRLNPAPAWSKQT
DGRPSKRRRRSSAASRSSSDSDGDSDSDVSAQPLEEFLRDVKQLAGLGSSKKRRLRPEVI
DIQRTRDISDKHKSSVECLSFHPEYPVLLSASTASILYLHHIAPEAQPTPNPQLTSVQAK
QVDVRRAEFLYPQGDKIFFGGRRKYFHHWDLPSGIVQKTTQITGHRLEHKTMERFKLSPC
GRYMAIIASTRKGGGIINILSVASMQWIAAARLSSRHGIADFAWWSTGNGMTILGRDGQV
GEYSMDTKSFVGLWYDDGCVGGIVIGLGGHGGPAALGEDRWVAVGSNSGITNIYDRSVLI
ASQTGDELVVKERPTPTRTFEQLITPVTVLTFSPDGQLLAFGSREKKDALRLVHLPSCTI
YRNWPTEQTPLGRITCVAFGRESDLLAVGNDSGKIRLWHIRS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaaggcggatgaatgggcttcagatcaagagagctccgaaagtgagctctct
tcggatgccgggtctgacaatttgccctcagccaagaagactgttgcaattttcgacaaa
gattccgacgaagaagagcttgagcgactggtactgggaaacaaggctgggtttcgagaa
aacctcttcaagaacggcattctcgacgacgaaaatgatgcggacacagattttcagatg
ggcgacgctggtgcgggcggtctagaagacgtagacgacgcggacctgttcgtgctggat
actggcgcaagcggtgcgtccaagtcgttggtaactgcaccaaaggcggaacagggcgac
gcaccggcatgggaagacagcgatgacgatagattggttgtttctttggctggaaccaac
aggttacgaaagctgcggatgaccgaggcagacgaccttgtcaccggctcggaatactcc
agacgactgcgccaacaattcttgcggctaaaccctgcgccagcgtggtcaaagcagacg
gacgggcgaccatctaagaggcggcgacgctcttcggcagcttcacgctcgtcgagtgac
tcagacggcgactcggactcagacgtttctgcacagcctttggaggaattcttgcgagac
gtcaaacaattggcgggattgggaagctcgaagaagcgcaggctccggccagaagttatc
gacattcaaagaacaagagacatttctgacaaacacaaatcatcagtcgaatgcctgtcg
ttccacccggaatatcccgtcctcttatctgccagcacagcatccatcttatacctgcac
catatcgcgccggaagctcagcccacaccaaaccctcaactcacatcagtccaagctaag
caagtggacgtgcgaagagccgagttcctgtacccgcaaggagacaagatcttctttggt
ggtcgcagaaaatactttcaccactgggacctcccgtctggcattgtccaaaagacgacg
caaatcactggccaccgcttggagcacaagaccatggagcgcttcaagcttagtccgtgc
ggcagatacatggccattatcgcatcgacaagaaaagggggcggtatcatcaacattctc
agcgtagcatctatgcaatggatagcagcggcgagactttccagtcgccacggcattgcg
gactttgcatggtggagcacaggcaatggcatgacgattctcggccgagacggtcaagtt
ggcgaatacagcatggatacgaaatccttcgtcgggctttggtacgacgacggttgcgtg
ggcggcattgtcatcggtcttggtggccatggcggtcctgccgccctgggagaggaccgg
tgggtagccgtcggttccaacagcggcatcacaaacatctacgacagaagcgtgcttatt
gcgtcgcaaacgggtgacgaactcgtcgtcaaggaacggccaacaccaaccagaaccttt
gagcagctcatcacgcctgttactgtgttgacattctccccagacggccagctgcttgct
tttggcagtcgagagaagaaggatgcgttgaggctagtgcatctgccgagctgcacgata
tatcgaaattggccaaccgagcagacgccgctggggcgtataacctgcgtggcgtttgga
agggagagcgatttgttggctgtgggcaatgactctggaaagattagactatggcatatt
aggagttag
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