KEGG   Pochonia chlamydosporia: VFPPC_15794
Entry
VFPPC_15794       CDS       T09407                                 
Name
(RefSeq) DNA ligase (polydeoxyribonucleotide synthase)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03030  DNA replication
pchm03410  Base excision repair
pchm03420  Nucleotide excision repair
pchm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VFPPC_15794
   03410 Base excision repair
    VFPPC_15794
   03420 Nucleotide excision repair
    VFPPC_15794
   03430 Mismatch repair
    VFPPC_15794
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pchm03032]
    VFPPC_15794
   03400 DNA repair and recombination proteins [BR:pchm03400]
    VFPPC_15794
Enzymes [BR:pchm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VFPPC_15794
    6.5.1.6  DNA ligase (ATP or NAD+)
     VFPPC_15794
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VFPPC_15794
DNA replication proteins [BR:pchm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    VFPPC_15794
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     VFPPC_15794
DNA repair and recombination proteins [BR:pchm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VFPPC_15794
   NER (nucleotide excision repair)
    Other NER factors
     VFPPC_15794
   MMR (mismatch excision repair)
    Other MMR factors
     VFPPC_15794
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PNKP_ligase
Other DBs
NCBI-GeneID: 28857541
NCBI-ProteinID: XP_018145016
UniProt: A0A179FRA9
LinkDB
Position
3:1840296..1843330
AA seq 917 aa
MVQTSFINGYIRRNTLIPSSFRQFPHTTNFFTVAARVNLGNILRRSLVQLSPGRLRIMAP
PKQATLGKFFGAKNPAPTQQTKLAFATRPAVGDGDEDVSAKENTDPDQDSKKRARVASKS
GAVKVEEDEDEGPVSKRARRNRVKIEDDEDDEPVKSGVKKEEEDTKDVKIKQSIEEAPNQ
EEDVKDVKIKKRSQSPDLDRKPSKTPDEEFKEEAASESGSEVEDEKPEVAAKAREKVQTQ
LKSKTAKHPYPDWKPGSPVPYAALCQTFSLIEMTTKRLIIMEHCSLFLRQVMRLTPDDLL
PTVLLMINKLAPDYAGIELGIGESLIMKAIGETTGRSLQVIKADQKDIGDLGLVAVKSRS
TQPTMFKPKPLTVRGVHQGLMNIATVTGNGAQGRKVDGIKKLLSAADAHSTVKADITKDK
GGPSEAKYIIRFLEGKLRLGLAERTVLVSLAQAIVCHEAEKKGKVPSTTEMENGESILKT
VYSELPSYDAIIPAVLEHGIMKLRECCKLRPGVPLKPMLAKPTKAITEVLDRFEGQKFTC
EYKYDGERAQIHYVAKDSDQELSQETLGAAREAADGVASIFSRNSEDLSKKYPDILAKLH
TWVKNDTKSFVLDCETVAWDVSEKKVLPFQQLMTRKKKDVKLEDVKVKVCVFAFDLLYLN
GLPVVEKPLRERRELLQQSFAPVEGEFSFATYMDGQELDEIQLFLDESVKASCEGLMVKM
LDGTESGYEPSKRSRNWLKVKKDYLAGVGDSLDLVVLGAYYGRGKRTSVYGAFLLACYNP
ANDTYETVCNIGTGFSEQVLEELHAQLSEIVIDRPKPFYSHSSGGQHQPDVWFEPRYVWE
VRTADLTLSPRYKAGCKEGVDPAGEKGISLRFPRFIKIRDDKKVDEATSSRQVAEMYRKQ
ESVTKNKGPSVDDDFEY
NT seq 2754 nt   +upstreamnt  +downstreamnt
atggtgcaaactagctttatcaatggctacatccgccgcaacacgctgattcccagctct
tttcgacaatttcctcacacgacgaattttttcacagtggctgctcgagtgaacctgggg
aatattctgcgtcggtctctggtacaattgtcacctgggagactgcgcatcatggcgccg
ccgaagcaggcgactttggggaaattttttggtgcgaagaacccggcaccgacgcagcag
acgaagcttgcgtttgcgacgagacctgctgtgggggatggtgatgaggatgtgagtgcg
aaggagaatacggatccggatcaggattcgaagaagcgagcgagggtggctagcaagagt
ggtgcggtgaaggtcgaagaggatgaggatgagggtcctgtgtcgaaacgcgcaagaagg
aatcgagtcaagattgaagacgatgaggatgacgaacctgtgaagtcgggtgtcaagaag
gaggaagaagataccaaggacgtcaagatcaaacagtcgattgaggaggctcccaatcag
gaagaagacgtcaaagatgtaaaaatcaagaaaaggagccaaagtccggatttggatcgc
aaacctagcaagactccagacgaagagtttaaggaggaagcagcgtcggaatctggctct
gaagtggaagacgaaaaaccagaagttgctgcaaaagcgagggaaaaggtgcaaacacaa
ctcaagtccaagacggcgaagcacccgtatccggattggaaaccaggttctcccgttccc
tacgctgcgctgtgtcaaacattctccttgattgagatgacgacgaagcgattgataatc
atggagcactgttcgctgtttcttcgacaagtcatgcgacttactccggacgatttgctc
cccacggttctgcttatgatcaacaagcttgctccggattacgcgggcattgagcttgga
atcggcgagtctctcatcatgaaggctattggtgagactacaggccgtagcttgcaggtc
atcaaggcggatcagaaggatattggtgacttggggctcgttgccgtcaagagtagatcg
acacagccgactatgtttaagccgaaaccgcttacggtcagaggcgtgcaccaaggtctg
atgaacattgctactgttacggggaatggtgcccagggccgaaaggttgacggcatcaag
aagctcttgtctgcggcggatgctcactctactgtcaaggctgacattacgaaagacaag
ggcggtccgagtgaagccaagtatatcattagattcctcgaggggaagctgagattagga
cttgctgaacggacggtgctggtttctcttgcgcaggctattgtctgtcatgaggccgag
aagaagggcaaggttcctagtaccactgaaatggagaatggggagtccattctcaagacg
gtgtacagtgaactgcctagctacgacgccatcatccccgctgtactggaacacggcatc
atgaaactaagagaatgctgcaagctgcgtcccggtgttcccctaaaacctatgttggcg
aagcccaccaaagccattaccgaggtcttggaccgatttgaaggccagaaattcacctgc
gaatacaagtacgacggtgaacgagcgcagattcactacgtcgccaaggattctgaccag
gaattgagtcaggaaacgctgggcgctgccagagaagctgccgatggagtggcgagcatc
ttctccagaaactcggaggacctttccaagaagtatcccgatattctggccaagctgcac
acgtgggtgaagaacgacaccaagagctttgtgttggactgcgaaaccgtcgcgtgggat
gtctctgaaaagaaggtccttccattccagcaacttatgacacgaaagaaaaaagacgtc
aagttggaggatgtgaaagtcaaggtgtgcgtattcgcttttgacctgttgtacttgaat
ggtctgcctgtggttgaaaagccactacgagaacgacgagagctgcttcaacagtccttt
gcccctgttgaaggagagttctcattcgctacatacatggacggccaggaactcgatgaa
atccaactcttcctagatgaaagtgtcaaggcttcatgcgagggcctcatggtcaagatg
ctagacggcacagaaagcggatacgaacccagcaagcgtagtcgaaactggctcaaggtc
aagaaagactacctcgccggcgtaggcgactcgctggacctcgtcgtcctaggcgcatac
tacggccgcggcaaacgcacttccgtctacggcgcattcctcctcgcgtgctacaacccc
gcaaacgacacctacgaaacggtctgcaacatcggcacaggcttctccgaacaagtcctc
gaggagctgcacgcccagttatccgagattgtaatcgaccgccccaaaccattctactcg
cactcctcgggcggccagcaccagccagacgtgtggtttgagccgcgctacgtgtgggaa
gtccggacggcggacctgacgctcagtccaaggtacaaggctggctgtaaggagggcgtt
gatccggcgggcgaaaaggggattagtctgcggtttccgcggtttattaagattcgggat
gataagaaggtggatgaggcgacgagtagtaggcaggttgcggagatgtatagaaagcag
gagagtgtgacgaagaataagggcccgtcggtggatgatgatttcgagtattga

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