KEGG   Pochonia chlamydosporia: VFPPC_15922
Entry
VFPPC_15922       CDS       T09407                                 
Name
(RefSeq) endoribonuclease ysh1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pchm  Pochonia chlamydosporia
Pathway
pchm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pchm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VFPPC_15922
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pchm03021]
    VFPPC_15922
   03019 Messenger RNA biogenesis [BR:pchm03019]
    VFPPC_15922
Transcription machinery [BR:pchm03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     VFPPC_15922
Messenger RNA biogenesis [BR:pchm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     VFPPC_15922
    U7-dependent histone pre-mRNA processing factors
     VFPPC_15922
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 28857669
NCBI-ProteinID: XP_022284526
UniProt: A0A179FU58
LinkDB
Position
3:complement(<4811126..>4814040)
AA seq 812 aa
MASKRKASAMNTAAAEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSANSTTQPVYTEQDHLNTFTQIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALM
KSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEFQKYPIYYASHLARKWLFRER
MAEAEASGGSAGQGGPWDFKHIRSLKNLDRFDDVGGCVMLASPGMLQSGVSRELFERWAP
SEKNGVIITGYSVEGTMARQIMQEPDQIPAVMSRNLAAGRRATGGDSERTLIPRRCSVAE
YSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTTKVKVYSPRNC
EELRIPFKADKMAKVVGKLASIPPPQDVDMDSASAPLITGVLVQNDFKLSLMAPEDLREY
AGLNTTTITCKQRLTLSAAGIELIKWALEGTFGSVEELPEMRRAQNGNSHAVKNGTETIN
EDDEDEYKPEEAADEEVAALVAAYLVMGCVTVRYRSNGEVELEWEGNMLNDGIADSVMAV
LFSVESSPAAVKRSSKQHSHSHAAEPITNGTNPHAHPSAADRLERLFWFLEAQFGADNVS
PVETPRLPDSEAQDESMAVDGEATDLEERKKKEIERLHKIGIPVPGVTIKVDKMLATVWL
EDLEVECANKVFADRVRAVVERGVEVTAPLWG
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggcatcaaaacgaaaagcgtcggccatgaatacggccgcggccgaagagcctgtcgac
ccgtccgacgaactcatgtttctttgtctaggaggcggtaacgaagtcggtcgatcgtgc
cacattattcaatacaagggcaagacagtgatgctcgatgccggacaacatccggcatac
gatggtcttgcagctcttccattctacgacgacttcgatctcagcaccgtagacgtactt
ctcatcagccattttcacgtcgaccatgctgcctcgttgccatatgtgctcgccaaaacc
aactttcgcggtcgtgtcttcatgacacacccgacaaaggctatttacaaatggctcatt
caagacagtgttcgcgttggcaacacgtctgcaaactcgacgacgcagcctgtatacacg
gagcaggatcacttgaatacgtttactcaaatcgaagccattgattatcacaccactcat
accatttcttccattcgaattacgccttaccctgccggccatgtgttgggcgcagccatg
tttctgattgagattgccgggctcaacatcttctttaccggcgattactcccgtgagcag
gatcggcatttagtctcggcagaggtacccaagggcgtcaaaattgacgttctcatcaca
gagtcgacatacggcattgcgtctcacgttccgcgactggagcgcgagcaggcgcttatg
aagtccatcactggcattttaaatagaggtggtcgtgcgttattgcctgtattcgctctc
ggtagagcacaggagttgctcctcattctggatgaatattggggaaagcaccccgagttc
cagaaatatcccatctattacgccagccacctggcgagaaagtggctcttccgagaacgc
atggccgaagccgaagcaagtggtggcagtgccggtcaagggggaccgtgggactttaag
catattcggtctctgaagaatctagatcgattcgacgacgtcggtggctgcgtgatgctt
gccagtcctggtatgcttcagagtggtgtcagtagagaactctttgagagatgggcgcct
agcgagaagaacggagtcatcattactggttacagtgtggagggcacaatggccaggcaa
atcatgcaagaaccagaccaaatcccagcagtcatgtctcgcaaccttgcggccggccgg
agagcaacaggcggagattctgagagaactctcatccctcgaagatgcagtgtcgcagag
tactcgtttgctgcccacgttgacggcgtcgagaaccgagaattcattgaagaagtggcc
gctccggttgttattctcgtgcacggcgaacagcacaacatgatgcgtctgaaatccaaa
ctcctgtccctcaacgcctccaaaaccaccaaagtaaaagtctactccccgcgcaactgt
gaggaactccgcatccccttcaaagccgacaaaatggccaaggtcgttggaaagctagcc
tcgatccctccaccacaagacgttgatatggacagcgcctctgcgcccctgatcacgggt
gtccttgtgcaaaacgacttcaagctctcactcatggctcccgaggacctacgagaatat
gcaggcctcaacacaaccaccataacctgcaaacaacgcctcacccttagtgccgctggc
atcgagctcatcaagtgggcattagagggcacattcggctccgtcgaagaattacctgag
atgcgacgcgcgcaaaacggcaacagccacgctgtaaaaaacgggacagaaacaatcaat
gaagacgacgaagatgagtacaagcccgaggaggctgcagacgaagaagtcgccgccttg
gtagcagcataccttgtcatgggctgcgtgacagtcaggtatcgcagcaatggtgaagtc
gagctcgagtgggagggcaacatgctcaacgacggcatcgccgactccgtcatggcagtc
ctattcagcgtcgagtcgtcaccagcagccgtgaagcgctcctcaaaacaacactcccac
tcgcacgcggcggaacccatcaccaacgggaccaatccccacgcccacccctcggcagca
gatcgcctcgagcgactcttctggttcctggaagctcagttcggagcagacaatgtgtcg
cccgttgaaacaccccgtctccctgactctgaagcgcaggacgaatccatggctgtcgac
ggcgaagctacagacctggaagaacgcaagaagaaggagattgagcgcctacacaagatt
ggcattcctgtgcccggcgtgaccatcaaggtagacaagatgctggcgacagtgtggctc
gaagatctggaggtggagtgtgcgaataaggtgtttgctgatagggtgagggctgtggtt
gaacgtggtgtggaagttacggcgcctctgtggggatag

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