Pochonia chlamydosporia: VFPPC_16080
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Entry
VFPPC_16080 CDS
T09407
Name
(RefSeq) ATP-dependent RNA helicase ROK1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchm03009
]
VFPPC_16080
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFPPC_16080
Ribosome biogenesis [BR:
pchm03009
]
Eukaryotic type
90S particles
Helicases
VFPPC_16080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4611
Motif
Other DBs
NCBI-GeneID:
28857827
NCBI-ProteinID:
XP_018144000
UniProt:
A0A179FPB4
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All DBs
Position
4:<3310344..>3312452
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AA seq
702 aa
AA seq
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MDILKVLSRGTKKTTKASGLNTNTQLPSAGTKANPQLYHDEIRGMKRKRGAEQKEDSAPT
ELPVVDFFAPKPEASETKKAVHQKEEREPSPPRSATKKLTEDECRQLLRSHRLKITLLSK
HEDQKKVKKSKKKKKAVIEEKKEEKKQLFPQPLESFGDLRTTYGISRQVAENLVQQSYRL
PTEVQMGSLPLLLQPEVALGEEEEDLDEGIDFLAVAPTGSGKTISFLIPAINNIMRRRAQ
ENLQGIHELEAVIVAPTRELVHQIVNEGSKLMQGTGVKIVAMKKTTQLSAEQQVLADDSS
EDEDEHDDDDESDSEDDKKPKGKKPKPHPLTKTDILVTTPALLLNFLTSGPSGTQKVLPM
VRDLILDEADVLLDPLFREQTLGLWTACTNPHLRLSFWSATMGSNIEALVTEKLKDRAEA
LGTTPKRFIRLVVGLKDTAVPNIVHRLTYTASEQGKLLALRQLLHPTSSDDSGPPLRPPF
LVFTQTIDRAMALHEELKYDIPLEAGGPSRIAALHSALADSARSSIMRKFRAGEIWVLIT
TDVLARGVDFAGVNGVVNYDVPGSAAAYVHRAGRTGRAGREGGIAVTFYTKEDIPFVKTV
ANVIAVSEKQAGKTGDEAGVQKWLLDALPKVGKADRKKLRERGVESRRSGSGSKAKITSK
SGYERRKENNRRGAMDASKRRRVDGGDHGGDDDEGEWDGFGD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggacattctcaaagtattgtcccgcgggacaaaaaagaccaccaaagcctccggtctc
aataccaacactcaactcccctccgctggcaccaaagccaatcctcagctctaccatgac
gaaatcagaggcatgaagcgcaagcgtggcgccgaacagaaggaagattcggctcccacg
gaattaccagtcgttgatttcttcgcccccaaaccagaggcctcagaaaccaagaaggcg
gtgcaccaaaaagaagagcgcgagccaagtccgccgcggtccgccacgaaaaaattgacc
gaagatgaatgccgacaactcttacgatcgcatcgcctcaagattacgcttctttcaaaa
catgaagatcagaagaaggttaagaagtcaaagaagaagaagaaggctgtcatcgaggaa
aagaaggaagaaaagaagcagctgttcccccagccactcgagtcttttggcgatttgcgc
actacgtacggaatatctcgtcaggttgcggagaacctggttcaacagagctaccgactt
cctacagaggtgcagatgggcagtttacccttgctacttcaacctgaagttgcccttggc
gaggaggaggaggacttggatgaagggatcgattttcttgctgttgccccgacaggtagc
ggaaagacgattagttttctgattccagcaattaacaatatcatgcggagacgggcgcaa
gagaatttacagggtattcacgagctcgaagctgtgattgtcgcaccgacaagagaactg
gttcaccagattgtgaatgagggaagcaagcttatgcaagggacgggcgttaagattgtt
gccatgaagaagacgacgcaactttctgcggagcaacaggttctcgctgatgatagctcg
gaggatgaagatgagcacgatgatgacgatgagtcagactctgaagatgacaagaaaccc
aagggaaagaaacctaagcctcaccctcttaccaagacggatattctcgttacgacgccg
gcactcctgctgaactttttgacatcaggtccgagtggtacccagaaggtcttgcccatg
gtcagggatctgatactcgacgaggcagatgttctcctggatccgctctttagagaacaa
acgttggggttgtggacagcctgtaccaacccccatctacgattatcattctggtcggca
acaatgggctccaacattgaggccctcgtcacagagaaactaaaggaccgagcagaggcg
ctaggcacgacaccaaaacggttcatacgtctcgtcgtcggactcaaggacactgctgta
cccaacattgtccaccgactcacatacacagccagcgagcagggcaaactcctcgctctc
cgacaactcctccacccaaccagcagcgacgactcaggaccaccactccgcccaccgttc
ctagtcttcacacaaactatcgacagagccatggcccttcacgaagaactaaagtacgac
atcccccttgaagccggcggtccctccagaatcgctgccctgcacagcgcccttgccgat
tcagcccgctccagcatcatgcgcaagttccgcgccggcgaaatctgggtcctcatcacg
acggacgtgctcgcccggggcgtggactttgcaggcgtaaacggcgtggttaactacgat
gtgcctggctcggcggcggcgtatgttcatcgcgccggaagaactggtcgcgccggccga
gagggcggcattgccgtcacgttttacaccaaggaagacataccatttgtcaagacggtt
gccaatgtcattgctgtgagtgagaagcaggccggtaagacgggtgatgaggcgggcgtg
cagaagtggttgctggatgccctcccgaaggtgggcaaggcggataggaagaagctgagg
gagaggggtgttgagtcgcggaggagtgggagcggaagcaaggcgaagattacgtcgaag
agtgggtatgagcggaggaaggagaataaccgaagaggggcgatggatgcgagtaagagg
aggagggtggatggtggtgatcatggtggtgatgatgatgagggtgagtgggatgggttt
ggggattag
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