Pochonia chlamydosporia: VFPPC_17857
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Entry
VFPPC_17857 CDS
T09407
Name
(RefSeq) CFIA complex component Rna14
KO
K14408
cleavage stimulation factor subunit 3
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VFPPC_17857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_17857
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
VFPPC_17857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
UTP6_C
Motif
Other DBs
NCBI-GeneID:
33936763
NCBI-ProteinID:
XP_022285413
UniProt:
A0A219AQ78
LinkDB
All DBs
Position
4:complement(1971069..1974218)
Genome browser
AA seq
984 aa
AA seq
DB search
MASDDSAWDGEGASGVEYDPLAQPSVDLEQSAQSSEAASESAENIGENEEEQDDGAEYDP
ESVGLDPPSHEMDNNSASATPSQKPAKPKMSGGFLVEASDDEDDVGHNAPSGAQNSALGH
VSQTSNGGTPASNAATPNVLPGMVGVDPVALLEARIQEDPRGDMDAWINLIADHKRRSRT
DDLRRLYNRFLEVFPQAADIWVAWIEVELNLDNFVDAEQLFGRCLMSVPNVKLWTLYLNY
IRRRNDLTNDPTGQARRTVTQSYEFVIDNIGVDRDSGNIWQDYVQFIKNGPGQVGGTGWQ
DQQKMDQLRKAYHRAITVPMSTVNTLWKEYDQFEMGLNKVTGRKFIQERSPGYMSAKSAN
IALDNITRNLKRENLPRLPPAPGFDGYEEFHAQVDMWRRWIAWEKEDPLVLKDEEPKVYS
QRILYCYKQALMALRFWPEIWVNAAAWCFEADIRENEKVLGTELLLQGIGANPESVLLAF
KHADHIEANYPEKEGDKSEYAKAVRQPYDTVLDTLYKMGDKVKEREKLEVNTLKQAAALE
PPVQESIEANDDDDEEEKTVRKSPTEERIAAIQQAYSAESQLLSKTISYVWIAMARAMRR
IQGKGSQTEGGLRKVFTDARQKGRLTSDVYVAVALLESVVYKDPVGAKIFERGARLFPND
AGFMIEYLKYLHSKDDTTNARVVFETCVNRLISKPETLPKAKQLYAYFHKYESQYGELSQ
ISKLEARMAELFPADPKLNYFTSRYSSDNFDPVAAPIIISKAVQMRPKLLVPIIEQPASA
RESIPPPRQEQSPRPQYIRATASPKRPFGIEDEELNPPKRVARGVSPLKGAAGRRLDQQR
RNQTSALHRDITFLLGILPPAHTYDTTRLNPINMVSLLRDTQLPDYASWKAKTGGQYRVS
SGPSHGRQTSGDFGNRPISPYGRMAAAAGGYRNSPLRAESGGAYAANPYAPPPDVSGTAP
SWQPPATGTYGAPPPAGQYGGYRY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgacgattctgcctgggatggcgaaggggcctctggtgtggaatacgatcct
ctcgcgcagccaagtgtagacctggagcaatctgcgcaaagttcggaagctgccagcgaa
tctgccgagaacattggtgagaacgaagaggaacaagatgatggggcggaatatgaccct
gaatcagtcggtctggatcccccttcacacgaaatggacaacaactctgcgtccgccaca
ccgtcacaaaaaccggctaaacctaagatgtcaggtggttttttggttgaagcatcagat
gatgaggacgatgttggccacaatgctccttccggagcacaaaactcagccttgggccat
gtcagtcaaaccagcaatggtggtacgcctgcctctaatgcagcaacccccaatgtattg
ccaggcatggttggggtagatccagtggcacttttggaagctcgaattcaggaggacccg
cgtggagatatggatgcgtggattaatcttattgccgaccacaaacgtcgcagtcggaca
gatgacctccgtcgactctacaatcgcttccttgaagtatttccccaagcggctgatatt
tgggttgcatggattgaggtggagctcaatctcgataactttgtggatgctgaacaactc
tttggtagatgcctgatgtctgtaccgaatgtcaagctttggacgttgtatctcaattac
attcggcgccggaatgacttgacaaatgacccaactgggcaagctcgacgcaccgtcacc
cagtcttacgaatttgtcatagacaacattggcgttgaccgtgattcgggcaatatctgg
caagactatgtccaatttatcaagaatggtcctggtcaggttggtggcacgggatggcag
gatcagcaaaaaatggatcaactccgcaaggcctatcatcgtgcgatcactgtccctatg
tctaccgtgaatactctgtggaaggaatatgatcaatttgaaatgggcttgaacaaagta
accggtcgcaaattcattcaagagaggtcgccggggtatatgtctgccaaaagtgccaac
attgctctggacaacatcacccgaaacttgaaacgagaaaatcttccacgattgccccct
gctccgggttttgatggctatgaagaattccatgctcaggttgatatgtggaggaggtgg
attgcctgggagaaggaagaccctttggttctcaaggacgaagagcccaaagtgtacagt
cagcgaattctatattgttacaaacaggcattgatggctctacgcttctggcccgagatt
tgggtcaacgctgctgcttggtgcttcgaagctgatatccgagaaaatgagaaagtcctc
ggtaccgagctactacttcagggcataggcgctaacccggagagtgtgttgcttgctttc
aaacacgcagaccatatcgaagccaactatcctgagaaagaaggggacaagtctgaatat
gcgaaagcggtacgccaaccttacgacaccgttttggataccctctacaaaatgggagac
aaggtgaaggagcgggagaagctcgaggtcaatactctcaagcaggcagcggcgctggaa
cctccggtccaggaatccattgaggcaaatgatgatgacgatgaagaagagaagaccgtc
aggaagtcaccaacggaagagcgtatcgccgctattcagcaggcctattctgcagagtca
caactcctttccaagaccatttcctatgtttggattgcgatggcccgagccatgcgccgt
attcaaggcaaaggtagtcaaaccgagggcggattgcggaaggttttcaccgacgcgcga
caaaagggtcgcttaacgagtgatgtctatgtcgctgtcgcattgctggagtcagtcgtc
tacaaggacccagttggtgcaaaaatattcgagcgtggcgcaagattatttccgaatgat
gcaggctttatgattgaatacctgaaatatttgcactccaaggatgataccaccaatgcc
cgcgttgtttttgagacatgtgttaatcgattaatatctaagccagagactttgccaaag
gccaagcaactctatgcctactttcacaaatacgaatcgcaatatggagagctgtcacag
atctcgaagctagaagctcgaatggcagaacttttcccagccgatcccaagctgaattac
tttacttcgcgatactcatccgacaactttgatcctgttgccgctccaatcatcatatct
aaagccgtacaaatgcgaccgaaactactagtaccaatcatcgagcagcccgcatcagcc
cgtgaaagtatcccgccgcccaggcaggaacagagcccacggccacaatatatccgagcc
accgcctccccaaagcgtccattcggcattgaggacgaagagctcaatccgccaaagaga
gtcgctagaggcgtttctccattgaaaggtgctgcgggacggcgtctcgaccaacagcgg
cgtaatcaaacgtcggcacttcatcgagacattacgttcctcctaggtatcttgcctccc
gcacacacgtatgacacgacgagacttaaccccatcaacatggtttcgctgcttcgcgac
acccagctacctgattatgcttcatggaaagccaagacgggtggtcaataccgtgttagc
tctgggccatctcacggcagacaaacatctggagactttggtaaccggccaattagccca
tacggacgcatggctgccgccgcaggaggatatcgaaactcaccactgagggcagagagc
ggaggtgcgtacgcagcaaatccttatgctccaccaccggatgtcagtggcacggctcct
tcatggcagcctcctgcaactggcacatatggagcaccgccgcctgcaggacagtacgga
ggttataggtattaa
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