Penaeus chinensis (fleshy prawn): 125025308
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Entry
125025308 CDS
T08118
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125025308
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125025308
3'-5' decay
Other 3'-5' decay factors
125025308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
PAM2
UvrD-helicase
ResIII
AAA_30
zf-CCCH
AAA_19
zf-C2H2_jaz
AAA_22
eIF-6
T2SSE
nSTAND_NTPase5
UPF0738
MOV-10_Ig-like
PhoH
Motif
Other DBs
NCBI-GeneID:
125025308
NCBI-ProteinID:
XP_047469239
LinkDB
All DBs
Position
4:complement(45220971..45242344)
Genome browser
AA seq
1662 aa
AA seq
DB search
MEKGRKGNSETSENTGSSSSLGKHKWKKKRNQEMQGARPKSKSPQGGMHPDVMDDASALD
PVSKGEELAVALRSGVRREKSFEKERSPTGRLHCSYCNVYFSGKLELQTHCRGQDHQTTI
MSDEGRDWKHRPPPRGLGADEYALCSTYKDTHNCRLGDQCVGAHSDAELLEWQERFEYRA
MKLERAREKQLHGATYADQLLERLSQAQHQDALISEKIDAVVVNMSMEPNLRVSQKPSQH
EWTINLRPNTPLRVVSLVHDAHRTHFAISEVTQIDNHRHIHKSYEPENNQEWINPDIEAV
LPPDMPVQEYKVTIIFKTAIYGTFRQAVIFDFGTEPVLMQRLCVDVIPVEDLSALEETKR
TILTRSERWCEENVDIVYFEPKPHELSDHDKSILAMYPPPTNENFVFTQSSMQKVPSRNN
YCSRLHDLLHIEELAQFDLMARFNIKTTLQIVNTYMLLPSTASTAKYSRPGELFAKLELS
SEISEDSHHGRLVLSNCNTILVAPITEDSEVKEASKQESSASVSPTAGRKEGESEEKEIL
KSKRKIFEVLIEDKTKKEIYLRFPEAAVSELHLAHDEEVTVEVQFQLNRLPLCEMHSALD
RLPSLDIVFPDITLEPTIPWSPIKQWGEGLDMRLNPKQKEALVAITAPHGLILPPILIIG
PYGTGKTYTLAQGIKQILQQPDTRILICTHSNSAADLYIKDYLHPYVQSGHEEAKPLRIY
YRNRWVTTVHSSVQKMCRASIEGQVACAYVPWCAGPIFQLHVQSYYAHYGVDTIPWQLGP
SHMNTARERGLSRRETTRQHWYTSDLFYEGRLVASGKQTAHPKFHPLTFFTARGEDFQDP
NSTAFYNNSEVYEVCEQVGEIISHWPKKEWGPLGENSIGVVTPYADQMVRIRAELRKRKL
YKINVERVLNVQGKQFRVIVLSTVRTRHTCKQGAEGLDFGFLSNAKLLTTAITRAQSLVA
VVGDPVSLCSVGKCRKLWEKFLQLCSEAGSLYGISWSTLRSQLDGVELKKTYVLNPLAPE
FVPRCIYYSIPPVPMVHTMPPYVNMYSPYNSYIPTYHMRPMLGPQALPYLPQPGMPSQWS
PVHYGAGAKTPLVRPAAARLGQPLIASHPLRSAVVTASHPHYVDPHGYDYQLHNNMISMY
PYQTGSFPPRLPAIRHPAELDPFTCGAFLPPPYQHIRPVPQRVVPPIGFRGPSFGRAMSL
PPHQLGRLTPHSEGEKSYQFLNNVHFPERQLSNPPSVIARPVRSRADTESPMSSHSRESS
HSSANDSRHSSQSQPQQHSQPHVHPQVEAQKIPLLGAHIQYQSKPQAPPNIHIDQQGPPM
QQLRQQTSHHQMIPQPHPYSNGSVPIEDAALPTPDVVRSINELINDHSPTKTASLWGSVD
VESNNKLDLIQSRCRSPTGETWLGGNSSNSIKAANLNMAHPNPNPWSGTPTSVGKIVTVQ
ELEASLHMRKYPSGNLPSSGLNKAPGPLPFSPRELEKNVHIRENEEVGGGFGKGDVPPPP
GFSSLNRMVDPLVRLDLNEGEPVSYRTPSLPLYLRRGSRESSSCSPGGTRNAHQGQVVGN
MHSNNHSSSLSSLWNIGREEMNPVSSQGELGLQNLSLSLGISPIGALNPFQNNQDSKTYA
GVVRSSLQSSDSEKGEECEYALKDLGDKRLYTSNNHLYQHFQ
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaggcagaaaaggaaattcagaaacaagcgaaaacacaggaagttcatcctca
cttggcaagcacaagtggaaaaagaagaggaaccaagagatgcagggggcacgtccaaag
tcaaaaagcccgcaagggggtatgcatccagatgtgatggatgatgcatcagctctagat
ccagtgtctaagggtgaagaattggcagtggcattgaggagtggagtgagaagagagaag
tcctttgagaaggaaaggtcacctactggacggctccattgctcctactgcaatgtgtac
ttcagtggaaagttggaactccagacccattgtcgtgggcaggaccaccaaacgaccatc
atgtctgatgaaggtcgggactggaagcatcgtcccccaccacgtggccttggagcagat
gagtatgccctctgttccacttacaaggacacacacaactgcaggttgggagaccagtgt
gtgggggcccatagtgatgcagaactactggagtggcaggagcggtttgaataccgtgcc
atgaaattggaacgagcgagagagaagcagctgcatggagcaacctatgcagaccagctc
ctggagcggctgtcacaagcccagcatcaagatgcccttatctcagagaagattgatgct
gttgttgtcaacatgagtatggagcccaacctcagagtttctcaaaaaccaagtcagcat
gaatggaccattaacctacgaccaaacacccctctcagggtggtttcgcttgttcatgat
gcccataggactcactttgccatctcagaagttacacagattgacaaccaccgacatatt
cataagtcttatgagccagagaataatcaggagtggataaaccctgacatagaggcagtg
cttccaccagacatgcctgtgcaggagtacaaagtcaccatcatcttcaaaacagccata
tatggaacattcaggcaggccgttatcttcgactttggcacagagccagtcttaatgcaa
cggttgtgtgtggatgtgatcccagtagaagacctaagtgctctggaggagactaagaga
acaatcttgactaggagtgaaagatggtgtgaagaaaatgtggatattgtctattttgag
cctaaacctcatgagttgagtgatcatgacaaaagcatattggcaatgtatcccccacca
accaatgagaattttgtgttcacacagtcctccatgcagaaggtaccctcaaggaacaac
tactgcagtcgcctccatgacctccttcacattgaggagttagcccagtttgatctgatg
gcaaggttcaacatcaagacaaccctacagattgtaaacacatacatgctgttaccttca
acagcatccacagccaagtactcaaggccaggtgaactttttgccaagctagaactctct
tcagagatatcagaagactcccatcatggaaggcttgtattatccaactgcaacaccatc
cttgtggctcctattaccgaggattcagaggtcaaggaagcttctaaacaggaatcatca
gcctctgtctcacctactgctggaaggaaagagggtgagagtgaggaaaaggaaatatta
aagtctaagagaaaaatctttgaggttttgattgaggacaagaccaagaaggagatttat
cttaggttcccagaggctgctgtctctgaattacatcttgcacatgatgaggaagtcaca
gtggaagtgcagtttcagctgaatcgactgccactctgcgagatgcattctgctctggac
cgcttgccatccctagatatcgtgttcccagacataaccttggagcccaccatcccatgg
agccccataaaacaatggggagaaggtctggacatgagattgaaccccaagcagaaggag
gctctagttgccatcacagcccctcatggtcttattctgccacctattctcataattggc
ccatatggtacagggaaaacttatactctagctcagggtatcaagcagattctgcagcag
cctgacacaagaattctcatttgcacacactccaacagtgctgcagacctgtacatcaag
gattatctgcatccatatgtacaatcaggacatgaggaagcaaagccactccgcatatac
taccgaaatcgttgggttacaactgtacactccagtgtgcaaaagatgtgtagagcatca
atagagggccaagtggcatgtgcatatgtgccatggtgcgctggtcccattttccagctg
catgtacagtcatattatgcacactatggtgttgacacaatcccctggcagctgggccca
agccacatgaatacagcccgggagagagggctttcgcgtcgggaaaccacccgacagcat
tggtacacatccgacctgttttatgagggccgtctggtagccagcggtaaacagacagca
catcccaaattccatccattgacgttcttcacagcacggggcgaggatttccaggatcca
aattccactgctttttacaacaactctgaggtatatgaagtatgtgagcaagttggagag
atcatcagccattggccaaaaaaggagtggggtccactaggtgaaaattccatcggtgtt
gtcaccccatatgctgaccaaatggtgcgcattagggctgagctgaggaagcgaaaacta
tacaagattaatgtagagagagtcctcaatgtacaaggcaagcagttcagagttatcgtg
ctatccactgtgaggacacgccacacgtgcaaacaaggagcggagggcttggactttggc
ttcctctccaatgcaaagctcctcaccacagccataacaagagcgcagagtctggttgct
gttgttggagatcctgtctctctctgctccgtggggaagtgcaggaaactttgggagaag
tttttgcagctgtgttctgaggctgggtctctgtatggaatatcatggtcaacacttcgc
tcacagcttgatggggtagaactcaagaaaacttatgttctgaacccattagcaccagaa
tttgtcccccgctgtatatattactctatcccaccagttccaatggtacatactatgcct
ccttatgtaaacatgtattccccttacaactcttatataccaacctatcacatgcgcccc
atgcttgggcctcaagccctaccctatctcccacagcctggcatgccatcccaatggtct
cctgtacattatggtgctggtgcaaagaccccattggtgaggccagcagcagctaggctt
gggcagcctcttattgcatcccatcctttacgatcagctgttgtcactgcatctcatccc
cattacgtggatccccatggatatgactatcagttacacaataacatgatttccatgtac
ccttatcagacaggatcctttcccccacggttacctgccatacggcacccagcagaacta
gacccctttacttgtggggccttcctaccacccccttaccagcacataaggcctgtgcca
caacgcgtggtccctccaattggattccgtggcccttcctttggacgagccatgtccctt
cccccacaccagctgggcagactaaccccacattcagaaggagagaagtcctaccagttt
ctcaataatgtacacttccccgagcggcaactctccaatcctccctctgtcattgccagg
ccagtacgttcacgagctgacaccgagtcacctatgtcatcacattccagagagagctca
cattcaagtgcaaatgatagtcgccattcttcacagtcccagccccaacaacactcacag
ccacatgttcatccacaagttgaggcacaaaagataccgttattaggagctcatatacaa
taccaatcaaaacctcaggctcctcctaatatccacattgatcaacaaggtcctcccatg
cagcagttgagacaacaaaccagccatcatcagatgatccctcagccacatccttattcc
aatggaagtgtccctattgaagatgcggccttgcccactccagatgttgtgcgcagtatt
aatgaactcattaatgaccattcaccaaccaagactgcaagcctctggggttcagttgat
gtggaatccaataacaagttggaccttatacaaagtaggtgtcgttcaccaacaggagaa
acatggttagggggaaatagttctaacagtatcaaagctgcaaatctgaacatggctcac
cctaatccaaatccttggtcaggaactcctaccagtgttggaaagattgtgactgttcag
gaacttgaggcctccctgcatatgaggaaatatcccagtggaaacctgccaagttcaggc
cttaataaagctccagggccacttcccttcagcccaagggagcttgagaaaaatgttcat
attcgagagaatgaggaagtaggaggtggctttgggaaaggggatgttccaccaccccca
ggctttagtagtttgaataggatggttgatcccttagtacggctggatctcaatgaggga
gagccagtgagctaccgtaccccaagtttacctctgtacttgagaagagggagtcgtgaa
tcatcatcctgttctcctggtggtacacggaatgcccaccagggccaagttgtggggaat
atgcatagcaacaaccacagcagttctctatcatcactctggaacatagggagagaagag
atgaatcctgtgtcctcccaaggtgaattaggccttcagaacctttcattatctcttggc
atttcacccatcggggcactaaatccttttcaaaacaaccaagacagcaaaacatatgca
ggagtcgtcaggtcgtctcttcaatcttcagattctgagaaaggtgaggagtgcgagtat
gcactcaaagatctgggtgataagaggctgtatacatcaaataatcatctatatcagcat
ttccagtaa
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integrated database retrieval system
