Penaeus chinensis (fleshy prawn): 125025722
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Entry
125025722 CDS
T08118
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125025722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125025722
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125025722
mRNA cycle factors
Common to processing body (P body) and stress granule
125025722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
125025722
NCBI-ProteinID:
XP_047469832
LinkDB
All DBs
Position
5:32882748..32912008
Genome browser
AA seq
1148 aa
AA seq
DB search
MKTASQLLREAEGLKSRVNGCTQLVGNNEAWAIQHQLQVVCGQLLVHWIESALDHGVERD
LWNLGFRNTITQLQAQAKDKQGGASEARDLLGWFLNSASGFYLQLFNQICTEYGLDLPFR
RKDSIYGSIELSGSPQEKCKGSSLKNALYLCQYCLVHLGDLARYRHQAKQAETYYRHAVV
VAPTSGHPYNQLALLEAGRGNRLAAVALYVRAMCVPCPFPGAPANLTQTLSKLLASSNRD
LSGSCRVTSDEYTSLFLQCHALLYLSGDVNSARKALPTLCSGLSTLVATSAFTRTSLIQM
VLVNLFALNYFSGNVKVRTSDEAGLRKDEEKQENPKDPKELEGCLHVVEELTVGILAALL
LPVHTIRDPDQLMTYPALPAIRLLFEWVRCEGGVFMSEAMKGKQQIWPGLCTLVNNLQQP
LTSFSASKYSEVPLAEDWDLQGFEPLQKMLSKYKYREGLSKPSPEEYNCIRASRLTEVAK
WFAEQNTDGNSVIKIREGTEDAVGGLMFEPMQHTSPPVDEVRALEQLSLQPKPEEKSSNK
RGKVGILKPQGSLERARETREQQQEPDKAENSLSQAMVDPMESKELGGGGLIIKVVSGAT
QSQNPLTGQPQSQPGQGQGQGQGQGQGQSQSQVRPSRTRTNVALQAIMKRNSALQEAKQV
TFKTPSPAISPNPSEASSDSHRSQLSTPPLLPATTQRDPLTSSPMPHHLAHMYQMGSNQG
PAPPPFTQHNQITESSFPNQPFTGQPPWVGVPGMGGSAPPPQVNMGRPIHQQNLPLNSGP
SFSLTHNGNSKSPQEVLRQLQTNTPSQSDLLTAGVFNRPPMEGFHQLGGSMPRRPGDLGS
RMREPAPRMLEMMGMARAPPSFGPVEGGGNPNRFHPPGSEGQGFDSSPRMTQAPPFRMQD
VDKTTTQAKISHLNHALLSPGTMNPHLFGMDSRQNVGGTGGIGVSGGSRSVFGETEVGPS
RGPGLSPPMGMGWGPGQNDNKNYHMNHPPPTLANLLQQHGPVDIRLNLPMDPSTDHFSSG
LPRLSLVNNPSMNNRSPPGVGPLGSVHLEMLTSTQPPGSIPMSQQSRGQQPFMPEQGDGE
GPASNTYSLFSPMSGGNMGMGAGPSRTVPHPLYSSNSQPSGQQSLWSGPGPSPLERLLEQ
KKYSSVPK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgccagtcagcttctaagggaggctgagggtctgaagagtcgtgtcaatggg
tgtacccagctagtgggcaataatgaagcctgggctatccaacaccaactgcaggtggtt
tgtggacaacttcttgtacactggattgaatcggccttggaccatggtgtggagcgtgat
ctatggaacctcggcttcaggaacaccataactcagctgcaggctcaagctaaggacaag
cagggaggagcaagtgaagcccgtgatctcctgggttggttcctcaactctgcaagtggc
ttctatttgcaactttttaatcaaatatgtacagaatatggactggacttacctttccgg
aggaaagacagtatctatggctccatcgaacttagtggctcccctcaagagaagtgtaaa
ggtagtagcctcaagaatgccttgtacttgtgccagtattgcctggtgcacttgggggac
ctggccaggtaccggcaccaagctaagcaggctgagacctattacagacatgccgttgtg
gttgctcccaccagcggtcacccatataatcagctggctttattagaagctggcagaggg
aaccgtcttgctgccgtggctctctatgtcagggccatgtgtgtgccttgtccctttccc
ggtgcacctgccaacctcacgcagacattgtccaaattgcttgccagcagcaaccgtgac
ctgagtggttcttgccgcgtgacaagcgatgagtacacgagtctgttcctccagtgccat
gccctgctgtacctcagtggtgatgtgaacagcgcacgaaaggctctccccactctatgc
tcgggcctgtccaccttggtagctacaagtgctttcacaagaactagtctgatccagatg
gtcttagtgaacctgtttgccctgaactacttctcggggaatgtgaaggtgaggaccagc
gatgaggcaggactcaggaaggacgaagagaagcaggagaatcccaaggatccgaaagag
ttggaaggttgtctgcatgttgttgaggagctgacagtggggatcctagctgcgcttctg
ttgcctgtccacaccatccgagacccagatcagctgatgacttacccggcgcttcctgca
atccgtcttttgtttgagtgggtgaggtgcgagggaggagtgttcatgtcagaggccatg
aaggggaagcagcagatctggccaggactctgcaccttagtcaacaaccttcagcaacct
ctaacctccttcagtgccagtaaatattcagaagtgccgctggcagaggattgggacttg
caaggcttcgaaccactgcagaagatgctcagtaaatataagtatagagaagggctctcc
aagccaagtccagaagagtacaactgcatccgagcctctagactgacggaagtagcaaag
tggtttgctgaacagaacactgacgggaactcagtcatcaagattcgtgaaggaactgaa
gatgcagtgggtggattgatgtttgagccgatgcagcatacaagtcccccagttgatgaa
gtacgagccctagaacaactctctctccagccaaagcctgaggaaaagtcatccaataag
cgaggtaaagtagggatcctgaagccgcagggatccttggaacgagcaagagagactcgt
gagcagcagcaggaacccgacaaagcagagaattcattgtctcaagctatggttgatcct
atggagtccaaagaactaggtggtggtgggttgatcatcaaggtggtctcaggagcaact
cagtcacaaaatccactcacaggtcagccccagtcgcagccaggtcaaggccaggggcag
ggccaggggcagggccaggggcaaagccagagccaggtgcgcccctcacgcacacgcacc
aatgtggcgctgcaggccatcatgaagaggaattcggctctgcaagaagcaaaacaggtc
actttcaagaccccatctcctgccatatctcccaacccttctgaagcttctagtgacagt
caccgcagccagctctcaactcctcctttgctcccagccacaacacaacgggaccccttg
accagctcccccatgccacaccatcttgcacatatgtatcagatgggttccaaccaaggt
ccagcacccccacccttcactcagcataatcagatcacagagagcagttttcctaaccag
ccgttcacaggacagcctccatgggtaggagtcccagggatgggtggaagtgcacctcca
ccccaggtgaacatgggtcgtccaatccaccagcagaacctgcctttgaactctggccca
agcttcagcctgactcataatgggaatagcaagtctcctcaagaagtgctgcgacagttg
cagacaaacacacccagccaatcagatttattaacagctggggtcttcaatagaccacca
atggagggcttccatcagctgggtggatccatgccaaggagaccaggtgacttgggcagt
agaatgcgggaacctgcaccaaggatgctagaaatgatgggtatggcaagagcacctcct
tcatttggtcctgtagagggaggaggaaatcctaatagatttcacccgccaggaagcgaa
ggccaaggatttgacagttccccccgaatgactcaagcaccaccattcagaatgcaagat
gtggacaagacaaccactcaagccaaaatcagtcacctaaatcatgcactgctctcccca
ggaaccatgaatcctcatctgtttgggatggactcgcgtcagaacgtaggaggaactggg
ggaataggggtgtcaggtgggtcgaggagtgtctttggggagactgaagttgggccttct
cggggaccaggcctctcccctcccatgggcatgggttggggtccagggcagaatgacaac
aaaaactaccacatgaaccaccctccacccactttagctaacttgctgcagcagcatggc
ccagttgacattaggctcaaccttcccatggacccaagcactgaccacttctcctctggc
ctgccaaggctgtctcttgtgaacaatccttccatgaacaaccgcagcccaccaggtgta
ggacctcttggctctgttcatctggaaatgcttacatccactcaacctcccggttccatt
cccatgagccagcagtctcgaggacaacaaccatttatgcctgagcaaggtgatggagaa
ggccctgcaagcaacacctactctctctttagtcctatgagtggtgggaatatgggcatg
ggtgcaggccccagtcgcactgttccacatcctctgtactctagtaactcacaacctagt
ggtcaacagtcattgtggtctgggcctggcccctcacccttggagcgtctgctagagcag
aagaaatacagcagtgttcccaagtga
DBGET
integrated database retrieval system
