Penaeus chinensis (fleshy prawn): 125025948
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Entry
125025948 CDS
T08118
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125025948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125025948
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125025948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
125025948
NCBI-ProteinID:
XP_047470263
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All DBs
Position
1:33815554..33825456
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AA seq
928 aa
AA seq
DB search
MANVQPKEQLVLDGAHEQGFLAFYKGLPEKPNTTVRLFDRGEYYTVHGQDAVLAARELFR
TNSVIKHLGGGSNKLESVVLSRLNFESFVRDLLLLKHYRVELYKQKSSSKNDWEAEYKAS
PGNLSQFEEILFGANNELTVTTGVIGVKLASEGGHRVVGIGYIDANGRQMSVAEFNDSDT
FSNLEALVVQLSPRECLIPSGDLGPDGAKLKQVLSRSQLLVSERKRTEFTNKDASQDLSR
LLRTKGDASAVAARPEMDRTNAICALAAVIKYLELLGDDSNFAQYTLSMYDLSQYMRLDS
AAVRALHVEPISGSVESSGGVSKTHTLLGLLDKCRTPLGHRLLAQWLRQPLVDINKIEER
LDLVEAMICTVEMRHSLGEEHLRRVPDLNRMARKLSRKAATLQDCYRLYQCVERLPYLCE
AIAKYDGPHTASLAAVFTTPLQELISDLAKYQEMIETTVDMEQANQGEYVIKPDFDETLA
ELRETMNGLEKDIQNQLRKAANDLCLEAGKSIKLESNAQLGFYFRVTLKEEKVLRNNRSY
HMIDTNKAGVRFRNNALQDLNEQHMASKEEYVQQQKTVVEEIMNIAVGYVEVLQNLGQVL
ATLDCIFALATAAVSAPIPYVRPKLLEQGSGVIKFQEIRHPCLELQDDVSFIPNDCTFDK
GNGLFHIITGPNMGGKSTYLRSVGAAVLMAQIGSFVACQEAEISIVDSILARVGAGDCQL
KGVSTFMAEMLETATILRSASNKSLIIIDELGRGTSTYDGFGLAWAISEYIAKEISAFCL
FATHFHELTALADEVDSVQNYHVTATTAHGALTLLYQVRPGPCDRSFGIHVAELANFPSS
VIEYAKRKAGELEDDFGNDDDDSDEAVKKRKLEKQEGEKLIEEFLTKAASLDVDNMSEQD
LEIEINKLRDEVKGKNNPYVSRLLSRET
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgttcagccgaaggagcagctcgtcctagatggcgcccacgagcaaggattc
ctcgccttttataagggtcttccggagaaaccaaacaccacggttcgcctgtttgaccgt
ggggagtactacacagtccacggccaagatgcagtgctggcagcaagggagcttttccgc
acgaattctgtcatcaagcacctgggtggaggaagtaacaaattagagtcggtggtttta
agtcgcctgaattttgaatcttttgtgcgtgatctcctcctgttgaagcattatagagtg
gaactctataagcagaagtcttcaagcaagaatgactgggaagcagaatataaggcatct
ccaggaaatctctcacagtttgaagagattctgtttggtgcaaataatgaactcacagtc
acaacgggtgtcattggagtcaaactagcaagtgaaggtggtcatagggttgtgggtatt
ggttacattgatgccaatggacgccagatgagtgttgcagagttcaatgacagtgataca
ttcagcaacctggaagcccttgtggttcagctcagcccaagagaatgtctcatcccctct
ggtgatctgggacctgatggagccaaactgaaacaggtgttatctcgcagccaactcctt
gtttccgaaagaaagagaacagaattcaccaacaaggatgcaagtcaagaccttagtcgg
cttctgcgcactaagggagatgcatctgctgttgctgcaagaccagaaatggaccgcaca
aatgcgatatgtgcactagcagctgtcataaaatatttagagcttctgggagatgatagt
aactttgcccagtatactctttctatgtatgacctcagccagtacatgcgtcttgacagt
gcagctgttagggcattacatgtagagcctatcagtggtagtgttgagtcttctggcggt
gtgtctaagactcatactctccttgggctcttagacaagtgcagaactccacttggacat
cgtctactggcacagtggcttagacagcctttagttgacattaataaaattgaagagaga
ttagatttagtggaagctatgatatgcactgtggagatgcgtcacagtcttggtgaggaa
cacttgcgtcgtgtgcctgacctcaaccgcatggcccgcaagctcagtcgaaaggcagcc
actttgcaagactgttacagactctaccagtgcgttgagaggctaccatacctgtgtgaa
gcaattgccaagtacgatggaccacacacagcttcactagcagcagtcttcacaactcct
cttcaggagttaatatcagacttggcaaagtatcaggagatgatagaaaccactgttgac
atggaacaagccaatcaaggagaatatgttatcaaacctgactttgatgagacattagca
gaattaagagaaaccatgaatggcttagaaaaggacatccagaaccagttgaggaaggct
gccaatgacctctgtctggaagcagggaaaagcatcaagctggagtccaatgcacagctc
ggcttttacttcagggtgacattaaaggaagagaaagtgctgcgaaataatcgaagctac
catatgattgatacaaacaaagcaggagtgaggtttagaaataatgcccttcaggacttg
aatgaacagcacatggcatcaaaggaagaatatgtacagcagcaaaaaacagtggttgag
gaaattatgaatattgcagttggctatgtggaagtcctgcaaaacttgggacaagtgctt
gctacattagattgcatttttgctcttgcaactgcagcagtatctgcacctattccctat
gtacggccaaaacttttggaacaaggatcaggtgtcataaagtttcaggagattcgtcat
ccttgcctggagctccaggatgatgtatcgtttataccaaatgattgcacatttgacaaa
ggtaatggattgttccatataatcactggacccaacatgggaggtaaaagcacttatctg
cgctctgtgggtgctgcagtcttaatggctcagattgggtcttttgttgcttgtcaggaa
gcagaaatatccatcgtagacagtattctagctcgggttggtgcaggagattgtcagctt
aagggtgtgtcaacatttatggcagagatgctcgagacagcaactattttaagatctgct
agcaacaagtcactgatcattattgatgaactgggacgtggtacatcaacttatgatggc
tttgggctagcatgggccatatcagagtatattgcaaaggagatttcagcattctgcctc
tttgctacacatttccatgagctcacagccttggcagatgaagtggacagtgttcagaat
taccatgtgacagctacaactgcacatggtgccttaactcttttataccaggtaagacct
ggaccttgtgatcgtagctttggaatccacgttgcagagctggccaacttcccatcaagt
gtgattgagtatgccaaaagaaaagctggggaactagaagatgactttggtaatgatgac
gacgattcagacgaagcagtcaaaaagaggaaattggagaaacaagaaggggaaaagctg
atcgaggagttccttaccaaggcagcttcattagatgttgataatatgagtgagcaagac
ctggagatagagatcaacaaattgcgcgatgaagtcaaagggaaaaacaatccctatgta
tcccggttattgtcacgggagacttaa
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