Penaeus chinensis (fleshy prawn): 125026331
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Entry
125026331 CDS
T08118
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pchn
Penaeus chinensis (fleshy prawn)
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pchn04147
]
125026331
00535 Proteoglycans [BR:
pchn00535
]
125026331
00536 Glycosaminoglycan binding proteins [BR:
pchn00536
]
125026331
Exosome [BR:
pchn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125026331
Proteoglycans [BR:
pchn00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125026331
Glycosaminoglycan binding proteins [BR:
pchn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125026331
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
125026331
NCBI-ProteinID:
XP_047470650
LinkDB
All DBs
Position
6:39198074..39344319
Genome browser
AA seq
1092 aa
AA seq
DB search
MLVLWFTQRFYLLVVTHVWLVLLQGALQELKIYSSPDLAAVQCDNNFASFAFGSGDGRGD
VGIMEDYFAPDMEEDDESPLPRFEGSGVGLEGAPPRLPPPPPLHDHFGIPGPKGDKGQRG
PPGESVAGPPGPPGPPGPPGPPGATAYMNPGLNMPDFGSGAGEDFIPEMDFSGSRRAPPA
PPGQCTCNETSLVASILAQIPRGPPGEDGKAGRDGMPGIPGTSGRPGPPGERGPIGGRGE
KGDRGERGNPGPEGQQGAKGESGMDGAPGMPGERGPQGPPGKPGWGNSRYDVDSGLAMAP
ARPGTPGAPGEKGSPGAPGMRGTRGYPGAKGDRGEPGLRGDKGDTGEAGRSGPAGPKGEP
GSPGMNGAPGPPGFIGVPGDKGDKGERGETGVGSPGPPGRPGGLTQEDHKAIVEQVLETL
ESKHGGVGVTLGSGINVWDAPGMPWSAVSDDEDVYLEGSGGLEYKPFYPNQLKGFRGPPG
PPGLPGPQGIEGIQGLMGPPGDIGPPGRPGLDGLPGARGPQGERGTPGPKGERGSSGPGG
EKGDRGAPGLPGPSGPVTTLIQPDGTNVTVVKGEKGDRGRRGKRGRPGPQGPPGAVGDLG
LPGWPGAAGRPGPPGPPGLPGLGQKGDRGQVGPPGPPGPPGPSSGGLLNSILGTSSSDVA
ETASRGSLPGPSGPPGPPGPPGPPGPPSRSPGETDGGQMYVPVPGPPGPPGPPGPPGLPG
YPIEGPEGPRGPPGPPGHTVPGPPGASGPRGPPGYGQRGESLGGIEGLRRITGNLGNRGP
PGPPGPPGPPASGEPSPSSAIVPGAVTFPDKASLLKMSDMSPVGTLAFVIDEEALLVRVS
SGWQYVAMGSVIPLPTTTPEPATTPEPPVARPPPLQVDSLVNTVDGPRLRLAALNQPYTG
DMHGVRGADYSCYREARRAGLRGTFRAFLTSRVQNLDSIVRYSDRNLPVVNTKGEVLFNT
WREIFSGTGGIFSQKPRIFSFDGKEILTNSAWPQKYIWHGSDLHGERSLSSYCDAWNSES
GDVVGLASSLLKNRLLSQDRLGCHNSFAVLCIEATSQARYRRRRHVTSPEAEMSLEQYEQ
FLQGIDKANEGN
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgttgtggttcactcagcggttctatctgttggttgtaacgcatgtgtggttg
gttctcctccagggggcgctgcaggaactcaagatctacagctcgccagatctcgcggcc
gttcagtgcgataacaactttgcgtcttttgcttttggttccggagacggcagaggagat
gtcggcattatggaagactacttcgcgcccgacatggaggaggacgacgagtcaccgctg
ccgagattcgagggttcgggagtcggcctcgagggagcgcccccccgcctgccgccgccc
ccgcccctgcacgaccactttggaatccctggcccgaaaggtgacaagggacagcggggc
cctccaggcgagagtgtagctggcccacccggcccacccggcccacccggcccacctggc
ccgcctggcgcaacggcgtacatgaacccgggcctgaatatgccggatttcggctccgga
gcgggagaggatttcatccccgagatggacttcagcgggagtcggcgagcgccgcccgcg
ccgcccggacagtgcacgtgcaatgagacgtcgttagtggcctcgatcctagcgcagatc
ccgcgcggcccccccggcgaggacggcaaggcgggcagggacgggatgcccgggatccct
ggcacctccggccgccctgggcccccgggggagaggggccccatcggaggcaggggcgag
aagggcgaccgcggcgagagaggcaatccaggacccgagggccagcagggcgcgaagggc
gagtcgggcatggacggcgcccctgggatgcccggcgagagaggcccccagggacccccc
gggaagccgggctgggggaactccagatatgacgtggacagcggcctggccatggcaccg
gcgagacctggcactcctggcgctccgggcgagaaagggtccccgggggcacctggcatg
cgtggcactcgagggtaccccggagccaagggggacagaggcgagcccggcctgcgaggc
gacaagggggacacgggcgaggcgggaaggagcggcccggcaggacctaagggcgaacca
ggatctcccggtatgaacggcgccccgggtcctccaggcttcatcggggttcctggcgac
aagggcgataaaggtgaacgaggtgaaacaggtgtcgggtcaccgggtcccccaggcaga
ccaggagggctgacgcaggaagaccataaggctattgtcgaacaggtgctggagactctg
gaaagcaagcacggaggcgttggagtcacgcttggctctggtatcaacgtttgggacgcc
cctggtatgccctggagcgcagtcagcgatgatgaagatgtctaccttgagggatcggga
ggtctggaatacaaacctttctaccctaatcagctgaagggcttccgcgggcccccggga
ccccctgggctgccgggaccccagggcatcgagggcatccagggcctgatgggacccccg
ggcgacatagggcccccggggcggccgggactcgacggactaccgggagcgaggggaccc
cagggcgagagaggaacccccggccccaagggagagcgaggctcttcagggcctggagga
gagaagggagaccgaggcgcccctggccttcctgggccttcggggcctgtcacaacgctc
atccaacctgacgggaccaatgttactgtagtgaagggtgaaaagggcgatcgtggtagg
cggggcaagcgaggtcgacctggtccccaagggcctccaggggctgtaggggacctgggt
cttcctggatggccgggcgccgccggacgacctggcccccctggcccgcccggactgcca
ggcctcggccagaagggcgaccgaggccaagtggggccacccggcccgcctggcccgccc
ggaccctcctccggcggactcctcaatagcatcttgggcacaagcagcagcgacgtcgcc
gagaccgcctcgagaggcagcctcccgggtccctccggccctccaggtccccccggcccc
cccggccccccaggacccccgtccaggagcccgggggagaccgacggcggccagatgtac
gtgccagtgcccggcccccccggcccgcctggacctccgggaccaccggggttgcctggc
taccccatcgagggcccagagggtccccgtggcccgcctggccctcctggacacaccgtc
cctggcccacccggagcgtctgggccaagaggtcccccggggtatggccagagaggagaa
agcttgggaggcatcgaaggcctgcgcaggatcacaggaaaccttggtaacagaggaccc
ccagggccccccggacccccaggccccccagccagcggagagccttcgccctcttcggcc
atcgtgcccggcgccgtcaccttcccggacaaagcgtctctgttgaagatgagcgacatg
tctcccgtgggaaccctggcctttgtgatcgacgaagaggcgcttctggtcagagtctcg
tcggggtggcagtacgtggcgatgggatcagtgattcctttacccacgaccacccccgag
ccagccacgaccccagagcccccagtggcgcggcctcctcccctccaggtggactccctc
gtcaacaccgtcgacggaccccggctaagactggccgccctcaaccagccatacacagga
gacatgcatggtgttcgaggggcggactactcctgctacagagaggcgcgcagggcgggt
ctcaggggcaccttcagggccttcctcacctccagggtgcagaatctggactccatcgtg
aggtactccgacaggaacttgccggtggttaatacgaagggagaagtcctcttcaacacg
tggcgagaaatattttcgggaacgggaggaatattctctcagaagccaagaatcttcagc
ttcgatggaaaggaaattttgaccaattctgcctggccgcagaagtacatctggcacggc
tccgacctccatggcgagcgctccctctcctcgtattgcgacgcgtggaacagcgagagc
ggcgacgtcgtgggtctcgcctcgtcgctcctgaagaaccggctcctgtcgcaggatcgc
ctcggctgccacaactcgttcgccgtcctgtgcatcgaagccactagccaagcacggtat
cggaggcggcgtcacgtgacctcgcccgaagctgaaatgagcctcgagcagtacgagcag
ttcctccaggggatcgacaaggcgaatgaggggaactga
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