Penaeus chinensis (fleshy prawn): 125027015
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Entry
125027015 CDS
T08118
Name
(RefSeq) endoribonuclease Dicer-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pchn03036
]
125027015
Chromosome and associated proteins [BR:
pchn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125027015
microRNA pathway
RISC loading complex
125027015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
PAZ
DEAD
Dicer_dsRBD
dsrm
Dicer_PBD
Dicer_platform
Motif
Other DBs
NCBI-GeneID:
125027015
NCBI-ProteinID:
XP_047471579
LinkDB
All DBs
Position
7:7935443..7993477
Genome browser
AA seq
1504 aa
AA seq
DB search
MNASKDEAAADFCPRSYQLELFNCALKKNSILVLGTGSGKTFISILLIKELGHQIRESLK
GGSKRTVFVVNTVPLVHQQAAAIQQHTPFEVGKYEGSMGVDYWTDEHWQNELEKHEVLVV
VAQIFLDLILHARLPLSSVNLLIIDECHHATGSHPMREIMRAYENLKQHSPDRLPRIMGL
TACVVHRKCKRKDVLKYMESLEAAMDCALVTSVDPVTVLKYTTGPKEKVICYYTESMTSI
YQETVKAQLAGLECDIITDCFINDKARKQIKKKVKNIEHIMSDLGDWCVARAIKYEIEHL
DETEGMEEDPKVREILKLLKERLREVYVACELKEKCMANPLEHITFKVKRLLEIFSKCNK
EVFGLIFVERRNTAKILYDLLLEIAQQNPVLNFVRPSYVVGCNSRPGIDIRLAELELRKQ
KETLEKFRKGETNFLISTSVLEEGVDIRKCNVVVRFDIPQNYRAYVQSRGRARAKPSLYL
LMVEEAKVSEMLECIGVYREIEASLQYLCHGRNLPTTEVTRKHFEEDEYIKPYEPYGPVG
PKITSNSAIQLVNLYCGKLPSDKFTDNLPEIVEEVKEGIVTVGIRLPIMAPLKDIIYGSG
WANKDLAKKSAALQLCIKLHEMGELDSNLRPKESNDDSLVEGLVDLPPEEPVPEGTSESG
TKKRKRVYAKDLCYPFLNMHGRTYYLYSIDIKPFGQTDQSVTIDSSTCINKIGFICKEGL
VCSPFPLFFSKWGDVMVNVKEVGPLTDLDTSLFDKIKKFHRLVFENLLELKENLINFDPE
ESKWDVFVVPLDFSEIIDLDMLNEMYSLDSIKPVMMRSHNQNTKFVRSKYEDALTYPLYG
IPSNQMYYVSQIFDELNPCNTFPQGKKGYESYENYFLERYGLEIKDKNQPLLEAKHIPKE
LNYLKKIPKKTKEKKGNSVPHFVPEFCGLIPIRASLWWQIMCMPSIFHRLNSFNLMHEFI
METKITSPAVKNKVLDFSWTRKFIHELLGSSENAVPIFLDRKKQKYIHPFNMLHAFTLKE
ASEDKDFNLERLELLGDSFLKFVTGEALFLRDESCHEGRLSQSRGKLVCNKTLFRLACQR
GLEGKIAAKVFNPKKNGYIPGFRIKVEFEEILRSLEVPHDFWHQVPNSVNNVGDLKEAVN
DLMSDDASMDDKAEKKGSCYNPWTEHEVSDKSIADCVEAIIGAYLLVCGDEAATSFLDWL
GVGVFKDKSLLMEPKAVRTAFVRKEHAQDLNMFYKKAVLDRLEKKIGYTFRDRSFIVQAV
THSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTEYSPGQLSDLRSYFVKNDTLGR
AAAKGKLHQHLLHLNPKLEASIDKFLSILNQDPLGEELNTEDDVQDCDDVEIPKALGDMV
EAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQEIHLNPVRQLLEEVPGEKQVEFVKG
QEDGNEKSSYVVTVKGFGTFTATGKNYRVAKKKVAAIALKGIHNLQAERAISQLPQLPES
LSSL
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttctaaggatgaagctgctgctgacttttgccctcggtcatatcaactagag
ctattcaactgtgctctaaagaagaactccatacttgtccttggcactgggtcaggcaaa
acttttatctcgatcctgctaatcaaagagcttgggcatcagattcgagagtcgcttaaa
ggaggaagcaaaagaactgtgtttgtggtgaacacagtaccacttgtccatcagcaggca
gcagccattcagcagcacacaccctttgaagttggcaagtatgaaggctccatgggagtc
gactactggacagatgagcattggcagaatgaacttgagaaacatgaagttttggtggtt
gtggctcaaatctttttggatttgatcttacatgcgaggctgccactttcatcagtcaac
ctcctgattatagatgagtgccatcacgcaacaggtagtcacccaatgcgtgagatcatg
agagcatatgagaatttaaagcagcactccccagacaggcttcccagaataatgggcttg
acagcttgtgtggttcaccgcaagtgcaagaggaaagatgttttgaagtacatggagagt
ctggaagcagctatggattgtgccttggtgacctctgttgatccagtaactgttctgaaa
tataccacagggcctaaggaaaaagtgatttgttactacacagagagcatgacatctatc
taccaagaaacagttaaagctcagcttgcaggtcttgaatgtgacatcataacagattgt
ttcataaatgacaaagcaagaaaacaaatcaagaaaaaagtcaagaatattgaacacata
atgtctgaccttggtgattggtgtgttgctcgagctataaagtatgaaattgaacacctt
gatgaaactgaaggaatggaggaagatccaaaagtcagagagatattgaagttgcttaaa
gagaggctgagagaagtatatgttgcctgtgagctaaaagaaaaatgtatggccaatcct
ctggagcatatcacattcaaagtgaaaaggctccttgaaatctttagtaagtgcaataaa
gaagtgtttggcttgatttttgtggagagaagaaatactgccaaaattctctatgacctc
cttttagagattgcacaacagaacccagtattaaattttgttagaccctcctatgttgta
ggatgcaattcacgtccaggcattgatatacgtctagcagaattggaactccgaaaacag
aaggaaactctagaaaagttcagaaagggggaaactaattttctgatatcaacaagtgtt
ttagaagaaggagttgatattaggaagtgcaatgtggtggttcgctttgacatcccacag
aattaccgtgcatatgtgcaatccagggggagggctcgtgctaaaccatctctttatctg
ttgatggtagaagaagcaaaagttagtgaaatgctggaatgcattggagtatacagggaa
attgaggcctcacttcaatacttgtgccatggtcggaatttgccaacaacagaggtgaca
agaaagcattttgaagaagatgaatacataaagccctatgaaccatatggacctgtagga
ccaaagattacaagcaattcagccatacaacttgttaatttgtattgtggaaaattgccc
tctgataaattcacagataatttgccagagatagttgaagaggtcaaagaagggattgta
actgttgggatcagacttccaatcatggcacctctgaaggacataatatatggtagtgga
tgggcaaacaaagatctagcaaagaaatctgctgccttgcaactttgtatcaaattgcat
gagatgggagagttagattccaacttacgaccaaaggaaagcaatgatgatagtttagta
gaaggtttggttgacctcccacctgaagaacctgttccagaaggcacatcagagtctggc
accaagaagagaaagcgggtttatgccaaggatttgtgttacccatttttaaatatgcat
ggaagaacatactatctctattctattgacatcaaaccttttggtcagacagatcagagt
gtaaccattgattcttctacatgtattaataagattggtttcatctgcaaagaaggttta
gtatgcagcccctttccattgttcttctcaaaatggggggatgtgatggtaaatgttaag
gaagttggtccactgacagacttggacactagtttatttgacaaaattaagaagtttcat
aggcttgtctttgaaaatctcttagagttgaaggaaaatttaataaactttgaccctgaa
gaatctaaatgggatgtgtttgttgtaccacttgatttttcagaaatcattgacttggac
atgttgaatgaaatgtattccttggactcaatcaaaccagtgatgatgaggtcccacaat
caaaataccaaatttgtaaggtcaaaatatgaagatgcactaacttatccactttatggc
ataccctctaaccaaatgtattatgtgtcacagatttttgatgaattaaatccttgtaat
acatttcctcagggtaaaaagggatatgagtcctatgaaaactacttcctggaaaggtat
ggactagaaatcaaggataagaatcagccattattggaagcaaaacacataccaaaggaa
ctgaattatctgaagaaaataccaaagaagacaaaagaaaagaaagggaattcagtgcca
cactttgtaccagaattctgtggtttaattcctataagagcatcattatggtggcagatt
atgtgcatgccatccatcttccatcgtctgaacagctttaatttgatgcatgagtttata
atggaaacaaagatcacatcacctgctgtaaagaataaagtccttgatttctcctggact
agaaaatttattcatgaactacttggctcctcagaaaatgctgtgccaatattcttggac
cggaagaagcaaaaatacattcatccattcaatatgttacatgcattcacacttaaagaa
gccagtgaagataaagacttcaacttagagagacttgaattattaggtgactcctttctc
aaatttgtcacaggagaagccctgtttctaagagatgaaagctgtcatgaaggaaggctt
tctcagagtcgaggcaagttggtatgtaacaaaaccttgtttagattggcatgccagaga
ggtctagaaggaaaaattgctgcaaaagttttcaacccgaagaagaatggatacatacca
ggctttagaataaaagttgaatttgaagaaatcttgcggtctcttgaagtgcctcatgac
ttctggcatcaggttcccaactctgtaaataatgttggtgacttaaaggaggcagtcaat
gatttgatgtcagatgatgcatccatggatgataaagcagagaaaaaggggtcctgttac
aacccatggacagagcatgaggtatctgacaagagcattgcagattgtgtggaagccata
attggagcctacctccttgtgtgtggggatgaggcagcaacctccttcttggattggctt
ggagttggggtcttcaaggacaagtccttgttaatggaaccaaaggcagtaagaactgct
tttgtgcgcaaggagcatgcacaagacctaaatatgttttacaagaaagcagtcttagac
cgactggagaagaagatcggctacactttcagggacagaagcttcatagttcaggctgtt
acacatagttcgtatgtgaacaaccaggtgacagactgctatcaaagattagaattccta
ggagatgctgtgctagactatctagtgacgtgtcatatattttgccgttttactgaatac
tctccaggtcagctgtctgatttgcggtcatattttgttaagaatgacactcttgggcga
gcagcagcaaaaggaaaacttcatcaacacttgttgcaccttaacccaaaacttgaagct
tccattgacaagtttctgtccattctcaatcaagatcccttaggagaggagttaaacaca
gaggatgatgtgcaagattgtgatgatgtggaaataccaaaagcacttggggatatggtg
gaagcgatcattggtgctgtttacctggatagcaacaggtcactcaaggtagcatggcaa
gtaatcgaaaggatattaggggacctgttgaatacatctattcaggaaatacatttgaac
ccagttcgtcaactgcttgaagaagtgcctggtgaaaagcaagttgaatttgtcaagggc
caagaagatggaaatgaaaagtcatcttatgttgtaacggtaaaagggtttggcaccttc
acagctaccggcaagaattatcgagtggcaaagaaaaaggttgcagcgattgcactaaaa
ggaattcacaacctgcaggctgaaagagccatttcacagttgcctcagctcccagaatcc
ctatcttccctctga
DBGET
integrated database retrieval system
