Penaeus chinensis (fleshy prawn): 125027058
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Entry
125027058 CDS
T08118
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125027058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchn03041
]
125027058
03009 Ribosome biogenesis [BR:
pchn03009
]
125027058
Enzymes [BR:
pchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125027058
Spliceosome [BR:
pchn03041
]
Complex A
U2 snRNP components
U2 related factors
125027058
Complex B
125027058
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125027058
Ribosome biogenesis [BR:
pchn03009
]
Eukaryotic type
90S particles
Helicases
125027058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
SRP54
AAA_19
Flavi_DEAD
ResIII
nSTAND3
AAA_30
ATPase
AAA_25
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
125027058
NCBI-ProteinID:
XP_047471690
LinkDB
All DBs
Position
7:complement(41037678..41049153)
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AA seq
734 aa
AA seq
DB search
MSKRKIDIDPSTLKKRYQGDFEKDSDRDSGYHSHGNASANSGFGHQQRGAVAMSLNPFTN
LPFTPRYYELYRKRIGLPVWEYRNRFFELLGRHQTIVLVGETGSGKTTQMPQWCVEFARS
KGKKGVACTQPRRVAAMSVAQRVAEELDVALGQEVGYSIRFEDCSSSKTVLKYMTDGMLL
REAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRSDLKLVVMSATLDAGKFQH
YFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEEIGGDVLLFLTGQEEI
EEACKRIKREVDALGPDVGELKCIPLYSTLPPNLQQRIFEAPPPNKPNGAIGRKVVVSTN
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF
RLYTEKAFKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEL
LNYLAALNDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVR
PNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDNFVNYRSLKSADNVRQ
QLSRIMDRFSLKRTSTDFNSRDYYINIRKALVSGFFMQIAHLERTGHYMTIKDNQVVQLH
PSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVSPNYYDMQNFPQCEARRQLES
IIARLESRQYREGF
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgaaaaatagacattgatccatcgacgctcaaaaagagatatcaaggagat
tttgaaaaggattcagacagagacagtggataccatagccatggaaatgcaagtgctaat
tccggctttggccatcagcagagaggggcagttgctatgtctcttaatccttttacaaat
ctaccttttacaccaagatattatgaattatataggaaaagaattggcttgccagtatgg
gaataccgtaatagattctttgagttgttgggccgtcatcagaccattgtattagttgga
gagaccgggtctggtaaaactacacagatgccccagtggtgtgttgagtttgctcgttcg
aaaggaaagaagggagttgcgtgtacccaacccaggagagtagcagccatgtcagtagct
caacgtgtagcagaggaattagatgtagctcttggacaggaggttggttattccatccgt
tttgaagactgttcatcatcaaagactgttctcaagtacatgactgatggtatgttactt
agagaagctatgagtgatccgatgcttgaaaattaccaggtaatcttgcttgatgaagct
catgaacgtacactggcaacagatatcctcatgggtgtcttgaaggaggtccttaagcaa
cgaagtgacttgaagctagtagttatgtctgccactttagatgctggtaaattccaacat
tactttgataaagcccccctactgaatgtcccaggcagaactcatcctgtcgaaattttc
tacacaccagagccagaaagggattacttagaagctgccattagaactgtcatacagata
cacatttgtgaagaaataggtggggatgttttgttgttccttactggtcaggaagaaatt
gaagaagcgtgtaagcgcatcaagagagaggtagatgctcttgggccagatgttggagag
ctcaaatgtattcctctgtattcaacactccctcccaatctccaacaaagaatttttgaa
gctccacctcccaacaaacccaatggcgctattggtcgtaaggtggtggtatcgacaaat
attgcagaaacatcactaacaattgatggtgttgtgtttgtgattgatccaggctttgca
aaacagaaggtgtacaatccaagaatccgtgtagaatcattgttggtctcaccaatcagt
aaggcttctgctcagcagcgtgctggtcgagcaggtcgaaccagacctggcaaatgtttc
cgcttgtacacagagaaggctttcaaaaatgagatgcaggacaatacctacccagaaatt
ctcagatccaatcttggctcggtagttttacaactaaagaaattgggcattgatgatctt
gtgcactttgacttcatggatccaccagcacctgagacacttatgagagccttggagctg
ctaaactacctggcagccctcaatgatgatggtaatctgactgaattaggtgcaattatg
gctgagttcccacttgatcctcagctggccaagatggttattgcttcttgcgatttcaac
tgctcaaacgaaattctgtccatcactgccatgctctcagtaccccagtgctttgtgcgc
cctaatgaggctaagaaggctgcagacgaggccaagatgagattcgcccacattgatggt
gaccaccttacgctgctcaatgtctaccatgccttcaaacaaaatatggaggatgtgcag
tggtgctatgacaactttgtcaactaccgttcactcaaatcagctgataacgttcgacaa
cagctctcgaggatcatggaccgattcagcctcaaacgtacctcaaccgacttcaattct
cgtgactactacattaacatccgcaaggctcttgtatcaggtttcttcatgcagattgct
catcttgaaagaactgggcattacatgactatcaaagataaccaggttgtgcagcttcac
ccatccacttgtttagaccacaaaccagagtgggtcctttacaatgagtttgtcttaacc
acgaaaaactacatccgcacagtgacagatataaaacctgagtggctgataaaagtttct
ccaaactactatgacatgcagaacttcccacagtgtgaagcccggcggcagctggagagt
attattgcacgcctggaatctagacagtatagagaagggttctag
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