Penaeus chinensis (fleshy prawn): 125027108
Help
Entry
125027108 CDS
T08118
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03008
Ribosome biogenesis in eukaryotes
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125027108
09123 Folding, sorting and degradation
03018 RNA degradation
125027108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125027108
03009 Ribosome biogenesis [BR:
pchn03009
]
125027108
03016 Transfer RNA biogenesis [BR:
pchn03016
]
125027108
03036 Chromosome and associated proteins [BR:
pchn03036
]
125027108
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125027108
mRNA degradation factors
5'-3' decay
5' exonucleases
125027108
Ribosome biogenesis [BR:
pchn03009
]
Eukaryotic type
Pre-60S particles
RNases
125027108
Transfer RNA biogenesis [BR:
pchn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125027108
Chromosome and associated proteins [BR:
pchn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125027108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
PTS_2-RNA
Motif
Other DBs
NCBI-GeneID:
125027108
NCBI-ProteinID:
XP_047471890
LinkDB
All DBs
Position
7:complement(1699845..1726632)
Genome browser
AA seq
1685 aa
AA seq
DB search
MGVPKFFKWISERYPSLSEVVKDYQIPDFDNLYLDMNGIIHICSHPNDNDPHFRMTEEKM
FQDIFHYIEVLFRLVQPKEVFFMAVDGVAPRAKMNQQRSRRFRSAREAVECEKKARDRGE
VLPSEERFDSNCITPGTEFMVRLDAQLQYFVTCKISQDKMWQNCKVIYSGHQTPGEGEHK
IMEYIRYSKSQPNYNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKQDNSRTP
TAEETTFHLLHLSLMREYINLEFYDLRDSLPFKYNLENIIDDWVLMGFLVGNDFIPHLPH
LHINKEALPILYRTYKEVMPTLDGYLNIGGKLHLGRFEKFMKKLAEFDLENFNDLNADLK
YFNSKRSKDDKVFKGRHQRENNLEAFFGDDEGNEENGAFGALEEDALDNEEIKKKFERLG
IQQDLMFEDDEDTDSEETIFDAEFRQHKREYYMNKMEFEHITPHELREQAEGYVRGIQWI
LNYYYNGVCSWSWYYPHHYCPYISDIKDFANMEIHFEMGKPFQPFEQLLAVLPPISMKLL
PTAYHDLMLSENSPLKKFYPETFRTDLNGKLQDWEAVVLIPFIDEEKLLTAMKPCNERLT
KREKERNCHGPMYICTYTPDNLGEYKAPAYYPPVGVNHNKVELICREEWELPPERIYKGL
CKGVILDAYFAGFPSLKHVYHTFHLAKEGVRVFSQASREESYILDVKSSAETLDLKNIAD
QLLGKVVFVSWPHLIEALVEAVSNNEEKYTLVKDGVQKTAVTDGIKEQFNLVKSNIATTY
QERWGIAIGNTHVVVYAKPMTGRKYVASPCGRMTLEKEWSNTIQPYAYQVMVKDLAVQDL
GYRKHLTPQEYFPPRSKVFMLGQPHYGCMGEVIEIDPSQKGRIRVAMTVTTDPNLEVVKQ
KESQHVERYMTGSQASHRAGIYHQLLARITGTVFLAPPVGDNPMAEMETRNKLNIGLNLK
NNRRNEEVIGYTRKIQEQNERPVWLYSERVIEAIREYQEKFPEVFDYMSRNSAQRDIFYQ
NDMFPENYKERVAELTTWLKSAAFAKSERQPCGTLALGETISKMILEEVDKVSTIRAKAV
KMQVRPHLLFKPNPYQGSTPPDRSVTYKMFDRVVNVREGHSVPLGAKGTVVGIQPASKEA
DIMYDILFDEAFNGALTLRGPATAKRCYRLHWAAMINISHGSRLATTSQKPPENRWNQSL
QQTWNQPSKPSGHSQYQQNRQTNKNGQFYQERWQQDRTANMHQNLQPQLLQGARGRGGPS
AMVSANSQSPQPGKNSQSSDPNSPQPPDPNQLPSPSGLRMISINSTNGGMVPRQGVNHRN
QQDNMIEIRSASQMQCAVHGTFYSQWSRIVKHGISRVQGRKYIPCYPFVPQGLSGSKAYQ
LLIFLDVQSALDDGMRFFKTGEKQLLCSGDRQGVISPKYFDKVLDRESETIIFPPRPPVG
LETISGKSQFPNHGQGQIGHGRGKAMASQQPKGMQLYQNIWSQLQGTDQGQVDLRPAQSQ
MLSHMLNISNNDDMQNVSSAGVKMNGSASASALNTGRKEVSVHDIFKGAMMNNHLQGGQN
NPNIISMLSAAHQSFSVTQQEAQNGRGDSPVKSAFVPTQVIRNQTPRKPRHDQQKQDSNQ
KSAVASEPQMGQKDEKGARADLPVPMPQVQKDSQQQKGLVPKPKRNRLAVKFNQQPEENT
SHSDN
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccgaaattttttaagtggatcagcgagcggtacccgtctctgagcgaggtc
gtcaaggactaccagataccagacttcgacaatttgtatttggatatgaatggcattatt
cacatttgctcacatccaaatgataatgatcctcatttccgtatgacggaagaaaagatg
tttcaggacatattccattacattgaggtcctttttcggcttgttcagcctaaagaagtt
ttcttcatggcagttgatggtgttgcaccaagggccaaaatgaatcagcagaggagccga
agatttcgttctgcaagagaggctgttgaatgtgagaagaaagccagggatcgtggtgag
gtactaccttcagaggaacgttttgattccaactgtatcacacctgggacagaatttatg
gtgcgattggatgctcaattgcagtattttgtaacctgcaagatatcacaagacaagatg
tggcagaactgcaaagtcatctactcagggcatcagactcctggtgaaggagagcacaag
attatggaatatatccgttattccaagtcccaacctaattacaaccccaacacgaggcac
tgtctctatggtcttgatgctgacctcataatgttggggctcacgtctcatgagccacac
ttctcattactcagggaagaggtacgttttggtggaaagcaagataacagtagaactcct
acggcagaagaaacaacgtttcacctccttcacctcagtcttatgagggaatacatcaac
ttagagttttatgacttacgggattcactgccatttaaatacaatttggaaaatattatc
gatgattgggtgctcatgggattccttgttggaaatgatttcatcccgcaccttccacat
ctccacataaataaggaagcattaccaattctgtataggacttataaggaggtaatgcca
acccttgatggatacttgaatattggaggcaagctccatttaggcaggtttgaaaagttt
atgaagaaacttgctgaatttgatttagaaaattttaatgacttgaatgcagatttaaag
tacttcaacagtaagaggtcaaaagatgacaaagtcttcaagggcagacatcaaagggag
aacaatcttgaagcattctttggtgacgatgaaggaaatgaagaaaatggcgcttttggt
gccttggaagaagatgcactggataatgaagaaataaagaaaaagtttgagaggctgggc
atccagcaggatctaatgtttgaggatgatgaagatacagatagtgaggagaccattttt
gacgcggagttccgccagcataaaagagaatactatatgaataaaatggaatttgaacac
ataactccacatgaattacgtgaacaagcagagggttatgtcagaggaatacagtggatc
ctgaattattattataatggagtttgttcatggtcatggtattatcctcatcactattgt
ccatatatatcagatataaaggactttgccaatatggaaatacattttgagatgggaaaa
ccctttcagccttttgagcaactcttggctgttttacctcccattagtatgaagcttctt
cctactgcttaccatgacctcatgttgagcgagaactcccctctcaagaaattctatcca
gaaaccttcagaactgatctcaatgggaaacttcaggattgggaagctgtagttcttatt
cccttcattgatgaggagaaacttctgactgctatgaaaccatgcaatgaaaggctgacc
aaaagggaaaaagaacgcaattgccatggtccaatgtatatatgcacttacacaccagat
aatcttggagagtacaaggcaccagcatattatcctccagttggagtgaaccataacaag
gtggagttaatctgtcgagaagaatgggaactgccgccagagagaatatacaagggctta
tgtaaaggagtcatattggatgcctattttgctggcttcccatctttaaagcacgtttat
cacactttccatctggccaaggagggagtgagagtcttttcgcaagcatcccgagaggag
agttatatcttggatgtcaaatcctctgctgagaccctagatctgaaaaacattgctgat
cagttgcttgggaaagttgtgtttgtctcatggccacacctgattgaagcattggttgaa
gctgttagtaacaatgaagaaaaatacactcttgtcaaagacggagtgcagaagacagct
gtaactgatggtattaaggaacagtttaatttagtcaagtcaaatattgcaaccacatat
caagaacgctggggtattgcgattgggaatacacatgttgtagtgtatgctaaacccatg
actggaagaaaatatgtggcatcaccttgtggaagaatgaccctagaaaaagaatggtcc
aatactatccagccatatgcataccaagtcatggtgaaggatttggcagtacaagactta
ggctacaggaaacatctgactcctcaggaatatttcccacctcgctccaaagtcttcatg
cttgggcagccacactatggatgtatgggagaggtgattgaaattgatccgagtcagaag
ggaagaatacgagtggctatgacagtgacaacagacccaaaccttgaagttgtgaagcaa
aaggaaagtcagcatgttgaaagatacatgacagggagccaggcatctcacagagctggg
atatatcaccagcttttggcacgaataacagggactgtgttcttggccccacctgttggt
gataacccaatggcagaaatggaaacaaggaacaaattgaacattggtcttaacctgaaa
aacaatcggagaaatgaggaagtcattgggtatacacgcaagatacaagaacaaaatgag
cgtcctgtttggctgtactcagaaagggttattgaagccatcagagagtaccaggaaaag
ttccctgaggtgtttgattacatgtcacgcaattctgcacagagagacatcttctatcaa
aacgacatgtttcctgaaaactacaaagagcgtgttgcagaattaaccacttggctgaag
agtgctgcttttgccaagtctgaaagacaaccatgtgggacactagcccttggagagaca
ataagtaagatgatcttggaagaggttgataaagtatccacaataagagccaaggctgtg
aagatgcaagtgcggcctcatcttctctttaagcctaatccataccaaggcagtactccc
cctgaccgcagtgtcacttataagatgtttgatcgagttgtcaatgtgagggagggccat
tccgtcccacttggtgctaagggaaccgttgttggaatccagccagccagcaaggaagca
gatatcatgtatgacattctttttgatgaagcctttaatggagcgctgactctccgtggc
cctgctacagcaaagaggtgttacaggctacattgggcagcaatgataaacatctcgcat
ggtagccgacttgcaactacctctcaaaagccccctgagaacagatggaaccaatctcta
cagcagacatggaatcagccaagcaaaccttctggacattcacagtatcagcagaacagg
cagacaaataagaacggacagttttaccaggaaagatggcagcaggatagaactgcaaac
atgcaccagaacctccagcctcaactgttacaaggggccagaggaagagggggacccagt
gcaatggtgtctgcaaactcccagtctcctcaacccggtaaaaacagtcagtccagtgat
cctaacagtccacaacctccagacccaaatcagctgcccagcccctcaggcctgcgaatg
atctcaattaattctaccaatggagggatggtacccaggcagggtgttaatcacagaaat
caacaggacaatatgattgaaattcgctctgcaagccagatgcagtgtgctgttcatggc
actttctattcccagtggagcaggatagttaagcatgggataagtagggttcaaggacgc
aagtatataccctgctacccgtttgttcctcagggtctgtcaggatcaaaggcatatcaa
ctccttatctttctggatgtgcaaagtgccttggatgatggtatgaggtttttcaaaaca
ggagaaaaacaacttctttgctcaggagacagacaaggtgtgatttctccaaagtatttt
gataaggtattggacagggagtcagagaccattattttcccacctagacctcctgttggt
ttagaaaccatttcaggtaagtcacagtttccaaaccatggtcaggggcaaattggccat
ggaagaggcaaggctatggcatcacagcagccaaaaggcatgcagctttaccagaacata
tggtcgcagctacagggaacagatcaaggacaagttgaccttcggccagctcagagtcag
atgctttcacacatgctcaacatttctaacaatgatgatatgcaaaatgtctcaagtgca
ggtgtgaaaatgaatggatctgcttcagcttcagctttaaatacaggaagaaaagaagtt
tcagtacatgatatatttaagggagcaatgatgaacaaccacttacagggaggacagaac
aatccaaatataatttcaatgctgagtgctgcacatcagtcattttctgtaacccaacag
gaagcccagaatggtagaggagattcacctgtcaagtctgcatttgtgcccacacaggtc
attcgaaatcagacccctagaaagcctcggcatgatcaacagaaacaggacagtaaccaa
aaaagtgcagttgcttctgaacctcaaatgggtcagaaagatgagaaaggtgcgagagca
gacctgccagttccaatgccgcaagtgcaaaaggacagccagcaacagaaggggctggtc
cccaagccaaaacgtaacagattagctgtaaaattcaatcagcaaccagaagaaaataca
agtcattcagataattag
DBGET
integrated database retrieval system
