Penaeus chinensis (fleshy prawn): 125027309
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Entry
125027309 CDS
T08118
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125027309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pchn03000
]
125027309
Transcription factors [BR:
pchn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
125027309
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
RHD_DNA_bind
RHD_dimer
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
125027309
NCBI-ProteinID:
XP_047472257
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All DBs
Position
7:complement(24989296..25017777)
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AA seq
1226 aa
AA seq
DB search
MSGCEAEATSRLDLLAQCGHIWVGGMSSPYSGESASPYSDHSAGVPSPPTVVTAYNRPYE
AVHHDGAFIQILEQPQSKFRFRYKSEMVGTHGQLKADRSDKNKAVFPTVKLAKWNHGPAV
IRLMLYTAEDNINQRKRHVHELSGKQCCKETGICEVVVDEKVDYTAVFQNLGIIHIAKRD
TKDIILQRKKEELITHARLRKPHLSYEDIRRSITQSDNKRMEEEAEEEAKNMDLNKVVLR
FQAFQYDKKIESYRPVTLPVDSDIVYNLKNATTGELKIVRMSACSAPCTGGTEIWLLVEK
VRRNNVQIKFFELDENDREVWSGYGDFSDTDVHHQYAIVFKTPRYRYTNLSTAVRVKVQL
ERPTDRDTSEPLDFTFMPDTLKRRRMLIENAQEEGKRHPSFPPAKRPANFNNYASEAIDL
SYNMRNPRGQEDSMPTPDILELLVGVSDFPNSNGLSPYTLEMSNQSPQHTVPSPGHPSDS
STHELYSPIHPGSVGTPNTEFTTISNSLLQVPSPGHPVPNSPQYSVMSPGEHSVGSPQSQ
YQGSGNFGGGNMSQQYSQSQSPQYIQSPSPVMMVPSPSYQDNGTQILNQYLQQPQQQQQL
QQQQQQQQQQQQQQQQQQQQQQFQQQQMQQFPKTQLMGSQVIQGAVDNWLTQQPNNIQLQ
QQPMQPQALQPQNNVPEFDLPSCFNIVGGLGPDATLMDMLEVADDQLAFESGLMGNSDIK
ADYGGKTDSKKKQKDQPVISGQDVDELTKMISNVRVDDSRGNRNPQSQVESMNQNPTQSV
DVAFKVAISAAECLQAYAATGDISLLLATHRYLLAVQNNQGDTALHTAVSNKNIEAFNKI
LKACEKIRPQDLLNAQNFARETALHQAVRGNETIMVRRLVAMPGCDVSIVDAQGNTPVHC
AAQMQSIQCLEAFLTRPVNGVRSAVTQAINAYNYQGETPLHLAVINGSLDSVRMLIEAGA
QVHHCERKRGANPLHLAVMHGHHEIVRYLLDHTSVTIEAGLFDGNTALHLAAQRRDSEMC
KILLRYNADPNAKNMLQKRKKLSESEEDEEEEEEISSRKEEEEDDDSEEEPDCYTPFDYA
GNDAEILSILRGEANQEEEEDQGAQAQEEVVGTKAGPLHSALDSGIDISVTDIQYSDGPG
EEDSVGELSERVRERLASHLSGDTWRHLAQLLDLDYMVPCLAGEPSPASTLLHPDNMKVS
LGITCPLETDYYRRCKSLARICQVFS
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatgtgaagcagaggccaccagtcgtctcgacctactcgcacagtgtggacat
atttgggtaggtgggatgagttccccatacagtggagagtctgcttctccatactcagac
cactcagctggagtaccatctccaccaacagtagtgactgcctacaatcgcccttatgaa
gctgttcaccacgatggggccttcattcaaatactggagcagccacagtctaaattccga
ttccgctacaagagtgagatggtgggcactcatggacagctgaaagcagatcgatcagac
aaaaataaagctgtttttcctacagtaaagcttgcaaaatggaatcacggaccagctgta
attcgtctgatgctctatacagcagaggacaacataaatcagagaaaacggcatgttcat
gaactgtcaggaaagcaatgttgcaaggagacgggtatctgtgaggttgttgtcgatgaa
aaagttgactacactgcggttttccaaaacctgggaatcattcacattgcaaagagggac
acaaaagatattattctccagaggaaaaaggaagagttgataacccatgcaagacttcgc
aagccacatctctcctatgaagacattaggaggagtatcacacaatctgataacaagagg
atggaagaagaagccgaagaagaggcaaagaacatggaccttaacaaagtggtcttgaga
ttccaggcttttcagtatgacaagaagattgaaagttatcgtcctgttacattaccagtt
gattctgatattgtctataacctaaagaatgccacaactggagagctaaagattgtacga
atgtcagcatgttcagcaccatgcacaggaggaacagaaatatggttgctggttgaaaaa
gttaggagaaataatgtgcagattaaattttttgagttggatgagaatgatcgggaggta
tggtcagggtatggtgacttcagtgatacagatgtccaccatcagtatgccattgttttc
aaaacccctagatatagatacacaaaccttagtactgcagtgcgtgtgaaagtacagctt
gaaagaccaacagacagagacacaagtgaaccactggacttcacattcatgcctgacacc
ttgaaacgcagaagaatgcttattgaaaatgcacaagaagagggaaagagacatccaagt
ttcccccctgcaaaaagaccagcaaatttcaacaattatgcaagtgaagctatagatctg
agttacaacatgagaaatccacggggtcaggaagactcaatgccaacacctgacatcttg
gagctgttggtgggagtttcagatttcccaaacagtaatgggctctcaccatacacttta
gagatgtcaaaccaatcaccacagcacactgttccctcacctggacatccctctgactcc
agcacccatgagctttattctcccatccatccaggctctgtaggaacccctaacactgag
tttaccaccatcagtaacagccttcttcaggttccttcacctggacacccagtgcctaac
tctccccagtacagtgtgatgtctccaggagaacactctgttggctcaccacagtctcag
taccagggctctggtaattttggaggagggaatatgtcacaacaatattcacagtcccag
tcgccacagtacattcaatctccatctccagtcatgatggtaccttctccatcatatcaa
gataatggaacacagattttaaatcagtatctgcaacagcctcaacagcagcagcagcta
cagcagcagcaacaacaacaacagcagcagcagcagcagcagcagcaacaacaacagcaa
cagcaatttcagcaacaacagatgcagcagttccccaagacacaactgatgggttcacaa
gtgatacaaggtgctgtagataattggttaacacagcagccaaacaatattcaacttcag
cagcagccaatgcaaccacaggcactacagccacaaaataatgtaccagagtttgaccta
ccaagctgcttcaatattgttggtggtctgggtcctgatgccaccctgatggatatgtta
gaagttgctgatgatcagttagcctttgaatctggcttgatgggcaatagtgacattaaa
gccgactatggaggaaaaacagattcaaagaagaaacagaaggatcagccagttatctca
ggacaggatgtggatgaacttacaaaaatgatctccaatgttcgagtagatgatagccga
ggcaacaggaaccctcagagccaagtagagtccatgaatcagaatcccactcagagtgta
gatgtggcattcaaggtggcgataagtgctgcggagtgtctgcaagcttatgctgcaacg
ggtgacatttccttacttttagcaacacatcgttatctcttggccgtacagaacaatcaa
ggagatactgctctacatactgctgtaagcaacaaaaatatagaagctttcaacaaaatc
ctcaaagcctgtgagaagatcaggcctcaggatttgttaaatgcgcagaactttgcaaga
gagacagcactacatcaggcagtccgtggcaatgagactattatggtgaggaggcttgtt
gctatgccaggctgcgatgtaagcattgttgatgcccaaggaaacacaccagtccattgt
gctgcccagatgcaaagtattcagtgtctggaagctttcctaaccagacctgtaaatgga
gtccgctcagcagtaacccaagccatcaatgcatacaattatcagggtgaaacccctcta
cacttggctgtaattaatggaagcctagacagtgtgcgtatgcttattgaagctggagca
caagttcatcattgtgagcgtaaaaggggagccaatccattgcatctggctgtcatgcat
ggtcatcatgagattgtcagatatcttcttgatcatacaagtgtaactattgaagctgga
ctatttgatggtaatacagctctccatttagctgcacaacggagagacagtgaaatgtgc
aagatattattaagatataatgctgatcctaatgccaaaaatatgctacaaaagcggaaa
aaattgtcagaatcagaggaggatgaagaggaggaggaagaaatttccagcagaaaagag
gaagaagaggatgatgattcagaagaagagccagattgttacacgccatttgattatgct
ggaaatgatgcagagatcctgtcaatccttcgaggtgaagctaatcaggaagaggaggaa
gaccaaggagctcaagcacaagaagaagtcgttggaaccaaagccggccctctacattct
gctcttgactctggcattgacatctcagtaactgacatacagtattctgatggccctgga
gaagaggacagtgtgggtgagctgagtgagcgcgtgcgagaacgacttgccagccacctg
agtggagatacctggcgccacctagctcagctcctagacttggattacatggtcccttgt
ttagctggggaaccatctccagcttcaactctcctccaccctgataacatgaaggttagc
ctcggtattacctgcccgctggagaccgattattatcgtcgctgtaaatccctggcaaga
atttgtcaagtattctcatga
DBGET
integrated database retrieval system
