Penaeus chinensis (fleshy prawn): 125027917
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Entry
125027917 CDS
T08118
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125027917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125027917
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125027917
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125027917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125027917
NCBI-ProteinID:
XP_047473015
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All DBs
Position
8:complement(16078417..16130783)
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AA seq
775 aa
AA seq
DB search
MAASRKLQGEIDRCLKKVAEGVEQFEDIWQKVHNASNSNQKEKYEADLKKEIKKLQRLRD
QIKSWLASGEIKDKSQLLENRKLIETQMERFKVVERETKTKAYSKEGLGAAQNKDPAQRE
REDLNNWLSSSIDTLNIQMDQFESEIESLLATQKKKKMDKEKSDRIEDLKEYIERHQYHI
KKLEILMRMLDNQSIDCDQIKMIKEDIEYYIESSQDPDFSENLGLYDDIDMEDLDYPTPE
ITVGKHVLGGSHDSTDGSTPSSACGSSPAPSPATNHSNDHDAPTTPHDKKRSNKNDESRS
VSSVKSSQPVKPMVVRPTTNNINTNNNISSNNSTTTSNSSSGSTTSIVVVNTNSSSKATP
PPSTPTKPVLGSTSQTTPNNSSTSSGTSNHLITTSQQNSTGRHSPEPSGLINSGIVNNTS
GSGSNSSSSSSCSNSSSSSGNSVSNSTGSGSSSSSSSSSSSSTSSSSGSSNNSSSSTSSN
SSSNGLSSGVSSSVSVTSPQGSLAGSATTTPALPSGAPTPSAAPTHQGHTPAMNASDTAV
SLKAIAQKKVNEVNSSSITSTVLESSSCPVSNTTTSSTNSNANNNNNNNSSSTRTITEKS
TTTCEANIPPLLGVAPLGPAKLTVEHDLQFKMLQAAYYHMPHPSDSERLRVHLPRQPCQT
PLYYPQVSGSDLPVSPPMSDTVDFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRF
HTKYMMWFQRHEEPKAITDEYEQGTYIYFDFENWGQRKKENFTFEYRFLEDRDLN
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcgagaaaattacaaggtgaaattgatcggtgcctgaaaaaggtagctgag
ggcgtggaacaatttgaggacatctggcaaaaagtccataatgcctccaacagtaaccaa
aaggaaaaatatgaagcggaccttaagaaggagattaagaagcttcagagattacgagac
caaatcaagtcctggttggcctcgggggaaatcaaggacaagtctcagctccttgaaaat
cggaagttgatagagactcaaatggaaagatttaaagttgtagaaagagaaacaaagacc
aaagcatatagtaaggaaggccttggggcagcacaaaacaaggatccagcccagcgggag
agagaagacctaaacaattggctcagttcctctatagacacgctaaatattcagatggac
caatttgagtcagaaattgaatctttattggcaacgcaaaagaagaagaaaatggacaaa
gagaagtcggatcgaatagaagatctcaaggaatatatagaaagacatcaataccacatc
aagaagttagagattctaatgagaatgttagataaccagtccatagattgtgaccagatc
aaaatgatcaaagaagatattgagtactacattgagtcgtctcaggatcctgacttcagt
gaaaatctcggtctttatgatgacatcgacatggaagacctggattaccccactcctgaa
ataactgtagggaaacatgtgctgggcgggagtcacgacagcacggacgggtcgacacca
tcttctgcgtgcgggtcctcgcctgccccgtctcctgccacaaaccattccaatgaccat
gacgcacccaccacccctcatgacaagaagagaagtaataaaaacgacgagtccagatcg
gtcagttcagtgaagtcaagccaacctgtcaaacctatggtagtgagaccaacgaccaac
aacatcaacaccaataataatattagttcgaacaacagcaccaccaccagtaacagcagc
tctggatctactacttccattgttgtggtcaacactaattcatcatcaaaggccacacca
cctccatccacccccacaaagcctgtactaggttcaacttctcaaactactccaaacaac
agtagcacaagttcaggtacttccaaccacctaattaccacctcacaacaaaatagcaca
ggaagacattcaccagaaccaagtggattgataaatagtggtattgtgaacaacaccagt
gggagtggaagcaacagtagcagtagtagcagctgcagcaacagcagtagcagcagtggc
aactctgtatcgaacagtacaggtagtgggagtagcagcagcagcagtagcagcagcagc
agtagcaccagcagcagcagtggcagcagcaacaatagcagcagcagtaccagcagcaac
agcagcagtaatggtctcagtagtggggtaagcagcagcgtgagtgtgacgtcaccgcaa
ggtagtctggcaggcagtgcaaccactacaccagcattaccttcaggggcaccaacgcca
tctgcagctcccacacatcaagggcacacaccagctatgaatgcttcagacactgcagta
tctttaaaagccatagcgcagaagaaagtcaatgaagttaattcttcatcaataacttca
acagtcttagaaagcagcagctgcccagtcagcaacaccactacgagcagcaccaactcc
aatgccaacaacaacaacaataacaacagctccagcaccaggaccatcactgagaagtcc
acaacgacctgcgaggccaacatcccgcccttattgggtgtggctcccctgggccctgcc
aagctgaccgttgagcatgacctgcagttcaagatgctccaggcggcctattaccacatg
cctcacccgtccgactcggagagactgagagtgcacctgccgcgccagccttgccagacg
ccgctctactatccacaggtgagcggctctgacttgccggtctcgcctcctatgtcagat
acagtagacttctttcagcggctgtctaccgaaactctcttctttatattttattacatg
gagggaacgaaagcccagtacctggcagcaaaagctctcaaaaagcaatcttggagattc
catacaaagtacatgatgtggtttcagaggcatgaagagccaaaggcaatcacagatgaa
tatgaacagggcacatatatctacttcgactttgagaactggggccagcggaagaaggaa
aacttcacgtttgaataccggttcttggaagaccgggatctgaactaa
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