Penaeus chinensis (fleshy prawn): 125029081
Help
Entry
125029081 CDS
T08118
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03030
DNA replication
pchn03420
Nucleotide excision repair
pchn03430
Mismatch repair
pchn03440
Homologous recombination
pchn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125029081
03420 Nucleotide excision repair
125029081
03430 Mismatch repair
125029081
03440 Homologous recombination
125029081
03460 Fanconi anemia pathway
125029081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pchn03000
]
125029081
03032 DNA replication proteins [BR:
pchn03032
]
125029081
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125029081
Transcription factors [BR:
pchn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125029081
DNA replication proteins [BR:
pchn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125029081
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125029081
MMR (mismatch excision repair)
125029081
DSBR (double strand breaks repair)
HR (homologous recombination)
125029081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
125029081
NCBI-ProteinID:
XP_047474800
LinkDB
All DBs
Position
9:36827950..36837686
Genome browser
AA seq
601 aa
AA seq
DB search
MSGLSNGVIVDITNGAHPEDPIVQILSMKRMPNGAQERFRILLSDGKWSSSFAMLATQLN
SKVASGEIANNCVIKMNRYVCNTVQNNKKVLIILDLTVVRTAEEVGGKIGEPVVFDPNKN
PQQEAAPAPRTTPLASTTGDAPQRNPLAQRNVPNTSASPARTPAGGNVHPISLLTPYQNK
WTIRARVTHKSDLRTWSNSRGEGKLFSMDLLDESGEIRATAFNEQVDKFMDMMEINKVYF
ISGCTLKTANKQYSTLNNDYEMTFNKMTEVTPCHEASDIPTMQFNFVPLDQLESLEKDTI
IDVIGVCKEAMEVASITSKASGKELKKRDVQVVDDTNREVRLTLWGRQAENFDGSQQPVL
AVKGAKLSDFNGRSLSLMSSSTLQINPDIREAHKLKGWFDNGGNSAETVNLSNQRGGGSA
GMGSNFKTFGEAKLENLGSGDQADYYTTKASVVLIRKENCLYSACPSDGCNKKVVDMNNG
LYRCEKCNREYDSFNWRLMLSANLADISDNQWVTVFQDQAEVLLGTTSSELGFMRENNAD
KFQNIFTEAAFKSFSFKLRVKMETYNDESRLKSTVVACSPLEPKEYNRRLISEIKQMSGQ
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcctcagcaacggcgtgatcgtggatattaccaatggggctcacccagaagat
cccattgtgcagatcttgtccatgaagcggatgccaaatggtgcccaggagcgctttcgc
atcttgctctccgatggcaaatggtcaagcagctttgccatgttggccacacagctcaat
agcaaagtggcaagtggagagattgcaaacaactgcgtcatcaaaatgaacagatatgtt
tgcaacacggttcagaacaataagaaggttttgatcattctggacctgactgtagtgcga
acagctgaggaagttggaggcaagattggagaaccagtggtgtttgaccctaataagaat
ccgcagcaggaggcagctcccgcaccaagaacaacacctttagcctccacaactggtgat
gcaccccaacgcaatcctttagcccagcgcaacgttccaaacacaagcgcctcgccagct
cgaactcccgctgggggtaatgttcaccccatcagcttgcttacaccttatcaaaataag
tggaccatccgtgctcgtgtcacccacaagtctgacctgcgcacttggtcaaattctcgt
ggggagggaaagcttttttcaatggacctgttggacgagtctggagaaatcagggctact
gctttcaatgaacaggtggacaaattcatggatatgatggagattaacaaagtgtatttc
atcagtggatgcacactcaaaacggccaacaaacagtactccaccctcaataatgattat
gagatgactttcaacaagatgacagaggtcactccctgtcatgaagctagtgacattcct
accatgcagttcaatttcgtccctctggatcagctcgagtctctggagaaagataccatc
attgatgttattggtgtttgcaaggaagctatggaagtagcctctattacatcaaaggcc
agtggcaaagaacttaagaagagagatgtgcaggtggttgatgatacaaatagagaggta
cgtcttaccctttggggacgtcaggcagagaactttgatggatcacagcaacctgtattg
gctgtgaagggtgcaaaattgtccgatttcaatgggcgttctttgtctttgatgtcgtca
tcaacactgcagatcaacccagatatccgtgaagcccacaaattgaagggatggtttgat
aatggaggcaactcggcagagacagtcaacctttccaatcagcgtggtggtggctcagca
ggtatgggctccaacttcaaaacatttggtgaggccaagctggagaacttgggtagtgga
gatcaagctgattattacaccacaaaggcttccgttgtgttgatacgcaaggagaactgc
ctttattcagcatgcccctcagatggttgcaacaagaaggtggtcgacatgaacaatggt
ctttacagatgtgaaaagtgtaaccgtgaatatgacagtttcaactggcggctgatgttg
tctgccaaccttgctgatatatcggacaatcaatgggtcacagttttccaagatcaggct
gaggtgctccttggaaccaccagctcagaattaggcttcatgagagagaacaacgcagac
aaattccaaaacatcttcacggaagcagctttcaagagcttttccttcaagcttcgtgtc
aaaatggagacgtacaatgatgagagcagactgaagtcgacagtagtagcctgcagccct
cttgaaccaaaagaatacaaccgtcgccttatctcagaaattaaacagatgtcaggacag
tcctaa
DBGET
integrated database retrieval system
