Penaeus chinensis (fleshy prawn): 125029159
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Entry
125029159 CDS
T08118
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
pchn
Penaeus chinensis (fleshy prawn)
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125029159
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125029159
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
NB-ARC
Motif
Other DBs
NCBI-GeneID:
125029159
NCBI-ProteinID:
XP_047474956
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All DBs
Position
9:706084..719843
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AA seq
517 aa
AA seq
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MADVGDKATRNKKKIRKVYQKPDREFETFLPDSMRAPAIQVLGKPPHEYKGGSGTYSNHY
EHPHPHNWEKRGGGRYHDDWDKRGSYGSGMLKISEGGRNTIFTRDAGRPPGRGQETDRGD
PDGSVTTPTPVILSRARSNSENRSTSPNPSVTAVRKDSVPSVVTGGSSSSQQYQIASKPL
MEASLTPERMMKGPARLLDETLNLCDDLASYLLDQSNFMVVALMGTQGVGKSALASLFVD
PETDINKMRSCTFRPESLEQLMSGCHGTNGIDIYITSHRLFILDCQPLLSPSIMDRIVTQ
EKKFTSDYNSTENLMEVESLQLLTLVMSIAHVVVLVQDSGTDPNLIRLLQTCEMMKPSSS
STPSSSSSSPSAPSGGDETQQYFPHVVFVHNRAPSHHFSPSTLKKLQGVYQEAFMGSCLE
NESRIGACNGLTYAPLAQTSCGSLVNLFLLPDMRSQPQSHVRFSEALREMRRQVLSLRRL
PLTHLTLTEKSWYQYVCRTWESVRKWSLFVEYSRLLP
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgtgggcgacaaggcaaccagaaataagaagaagattcgcaaagtgtatcag
aagcctgacagggaatttgagaccttcttgcctgacagcatgcgagctccagcaatccag
gtgttagggaagcctccccacgagtacaagggtggctcaggcacctattccaaccactat
gagcaccctcatccccacaactgggagaagcgaggtggaggccgctaccacgatgactgg
gacaagaggggcagctatgggagcgggatgctcaagatcagcgagggcggccgcaacact
atcttcacccgggatgcgggtcgcccacccggacgtggccaggagacagacagaggagac
cccgatggctccgtcaccacgcccacccccgttatcttatccagggcgcgcagcaacagc
gagaaccggtcaacctcacccaacccatcagttactgctgtgaggaaggattcagtcccc
agtgttgtgacaggaggaagttccagcagccagcagtaccagattgcttcaaagcctctc
atggaagcctccttgaccccagagaggatgatgaagggtcctgcacggctgctggatgag
acccttaatctgtgtgatgaccttgcttcgtacttgctggaccagagcaacttcatggtg
gtggctctgatggggacacaaggagttggcaagtctgctctggcctctctctttgtggat
cccgagacagatataaataagatgaggtcatgcactttccggccagagagcttggagcag
ctgatgtcaggatgtcacggcaccaacggcattgacatctacatcaccagccaccgcctc
ttcattctggactgccagccactcctctcaccctccattatggaccgcattgtcacccag
gagaagaagttcacttcagattacaattcaacagagaacctgatggaagtggagtcactg
cagctgctgacactggtgatgagcattgcccatgtggtcgtcctcgttcaggattctggc
acagatcccaatctgattcgcctcctgcagacatgcgagatgatgaaaccttcgtcttcc
tccacaccttcctcctcctcctcttcaccctcagccccgtcaggaggggatgagacacag
cagtactttccacatgtggtgttcgtgcacaaccgggctccctcccatcacttttctccc
tccaccttgaagaagttgcagggtgtgtaccaggaagcctttatgggctcgtgcctggag
aatgagagtcgaataggggcttgcaatggcctcacatatgctccactggcccagacatcc
tgtggaagtctggttaacctcttcttgttgccagacatgcgctctcagccccagagtcat
gtgaggttctctgaagctctgcgtgagatgcgacggcaggtgttgagtttgcgtcgtctg
ccccttacccacctcacacttacagagaaatcctggtaccagtatgtgtgccgcacatgg
gagagtgtgcggaagtggagcctcttcgtggagtacagccgcctgctgccttga
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