Penaeus chinensis (fleshy prawn): 125029271
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Entry
125029271 CDS
T08118
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125029271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchn03041
]
125029271
Spliceosome [BR:
pchn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125029271
Complex C
U5 SnRNP specific factors
125029271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125029271
NCBI-ProteinID:
XP_047475119
LinkDB
All DBs
Position
9:complement(13924724..13938015)
Genome browser
AA seq
2374 aa
AA seq
DB search
MALPPYLIPGSPWAYMAQQQAQLAAAQAQAAHAQMHAHFQAQAQAQAQAQAIPRPQAGPP
PVENVSLEKMQEKARRWQQLHNKKYAEKRKFGFVDVQKEEMPPEHIRKIIRDHGDMSSRK
YRHDKRVYLGALKFMPHAVLKLLENMPMPWEQIRDVQVLYHITGAITFVNEIPWVIEPVY
IAQWSTMWMMMRREKRDRRHFKRMRFPPFDDEEPPLDFADNVLDVEPLEAIQMELDPEED
VEVAEWFYEHKPLIDTKHVNGPTYRKWRLTLPQMATLYRLANQLLTDVSDNNYFYLFDLK
SFFTAKALNMALPGGPKFEPLIKDMNPADEDWNEFNDINKIIVRHQVRTEYRIAFPYLFN
NMPQYVHLSWYHTPVVLYIKTEDPDLPAFYFDPLINPISHRNTVKGETLLPDDDEDFELP
EGVESLLKDWQLYDDATANGIALLWAPRPFNMRSGTMRRAIDVPLVKTWYREHCPPGQPV
KVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQTTTLDWVEVGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAH
VQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGQV
GKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHF
DLELRASVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILR
YVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNMGRLTRLYLKSEQERQHNYQKDGPYI
SPEEAVAIYTTTVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQR
EELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAY
LDQYLWYEADKRRLFPPWVKPGDSEPPPLLVYKWCQGINNLTDVWDTADGECNVMLESKY
EKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVDINYKDMNHTNRYGIICGLQFASFIV
QYYGLVMDLLVLGLKRAADMAGPPQMPNDFLNFQDVATETQHPIRLYSRYIDRIHIFFRF
SAEEAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRL
PRSVTTVNWENSFVSVYSKDNPNLLFNMAGFECRILPKCRMTHEEFKHRDGVWNLQNEVT
KERTSQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYYRESVVNT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR
WSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWETEFLDSQRVWAEYALKRQEATAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNYSK
PSLLADSKDTMDGSTTQKYWIDVQLRWGDYDSHDVERYARAKFLDYTTDNMSLYPSPTGV
LIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEP
YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI
IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKNISSYTAFSRLILILR
ALHVNNDRTKVLLKPDKTTITEPHHIWPSLSDEDWVKVEVQLKDLILADYGKKNNVNVAS
LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSN
YETATFSSKTEWRVRAISATNLHLRTNYIYVSSDDIKETGFTYILPKNVLKKFIIISDLR
TQIAGYLYGVSPPDNPQVKEIRCIVMPPQWGTHQMVHLPHKLPGHEFLNELEPLGWIHTQ
PNELPQLSPHDITTHATIMADNTSWTTDRTIVITCSFTPGSCSLQAYKLTPSGFEWGRNN
KDMGNNPKGYLPSHYEKVQMLLSDRFLGLFMTPLQGSWNYNFMGVRHDPNMKYDLQLASP
KEFYHEVHRPAHFLNFSSLDEADTAGADRDNALE
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggctttgcctccctacctgatcccgggcagcccctgggcctatatggcacagcagcag
gcacagcttgctgctgcccaggcccaggctgctcatgctcagatgcatgcacactttcaa
gcccaagcccaagcacaggcacaagcccaagccattccacgtccacaagcaggacctccg
ccagtggaaaatgtttcactggagaagatgcaggagaaagctcgaagatggcaacagctc
cataacaaaaagtatgcagagaaaagaaaatttggattcgtggatgtacagaaagaggaa
atgccacccgagcacatccggaagatcattcgtgatcatggtgacatgtcaagcagaaag
taccgtcatgataagcgcgtttacttaggagcactgaagttcatgcctcatgctgtgttg
aagctgctggagaatatgcctatgccctgggaacaaataagagatgtgcaggtcctatac
cacatcactggagccatcacctttgtcaatgagatcccctgggtgattgagcctgtatac
attgcccagtggtccaccatgtggatgatgatgaggcgagagaagcgagatcgtcggcat
ttcaagaggatgagattccctcccttcgacgatgaagaaccccctctggattttgcagat
aacgtgcttgatgtggagcccttggaggctattcagatggagctggatcctgaggaagat
gtggaggttgctgagtggttctatgagcacaagcccctcatagacacaaaacatgtgaat
ggtccaacgtaccgcaagtggcggctgactctgccacagatggcaactctatatagattg
gcaaaccagctgctcacagatgtgtcagacaataattacttctatctgtttgacttgaaa
tccttcttcacagcaaaggccctgaacatggcacttcctggcgggcccaagtttgagccc
ctgattaaggacatgaacccagctgatgaggactggaatgagttcaacgacatcaacaaa
atcatcgtgcgtcatcaggtgcgcactgagtaccgcatcgccttcccctacctcttcaac
aacatgcctcagtatgtgcacctcagttggtaccacacccctgtggtcttgtacattaag
acagaggatcctgaccttcctgccttctacttcgatccactcatcaaccccatctcgcac
cgcaacaccgtcaagggggagacacttttgcctgatgatgatgaggactttgagctgcca
gagggtgtggaatccctgctaaaggattggcagctctacgatgatgcaactgcaaatgga
attgcactcctgtgggctccacggcccttcaacatgagatcaggcaccatgaggagggcc
attgatgtcccactggtgaagacctggtacagggagcactgcccacctggccagcctgtt
aaggtccgtgtgtcgtaccagaagctgttgaagtactacgtcctgaatgccttgaagcac
cgccccccgaaggcccagaagaagcgctatttgttccgctcattcaaggccaccaagttc
ttccagacgacaactttggactgggttgaggttggccttcaggtatgccggcagggatac
aacatgttgaacctcctgatccatcgcaagaatttgaattaccttcacttggattacaat
ttcaatctgaaaccagtcaagaccctcaccacaaaggagagaaagaagtcaaggttcggt
aatgccttccatctgtgtcgtgagatcttgaggttgaccaagttggttgttgatgcccat
gttcagtacaggctgaacaatgtggatgccttccagttggctgatggcttgcagtacatt
tttgcccatgttggccagttgacaggtatgtacagatacaagtacaaactcatgagacaa
atcaggatgtgcaaagatctgaagcacgtcatctactacaggtttaatactggtcaagtg
ggaaagggccctggatgtggtttctgggccccaggctggagagtctggctcttctttatg
agaggaatcacaccactcttggagcgttggctgggcaacctgctctcacgtcaattcgag
ggaagacacagcaagggcgtggcaaagactgtcaccaagcagcgagtagagtctcacttt
gatcttgagttgagagcctctgtgatgcacgacatcctagacatgatgccagagggcatc
aagcagaacaaggctcgtacaatcctccagcatctgtctgaagcctggaggtgctggaag
gcaaacatcccatggaaggtacctggactccccacccccattgagaacatgatccttcgt
tatgtgaaaatgaaggcagattggtggacaaacacggctcactataatcgagaaagaatt
cgccgaggagcaacagtagacaagactgtgtgcaagaagaacatgggcagactgacacgt
ctgtatctgaaatcagagcaagaaaggcagcacaactaccagaaggatggtccttacatc
agtccagaagaagctgtggccatctacacaacaactgttcactggctggaatcacgacga
tttgcccctatcccattccccccgctgtcatacaagcatgacaccaaactcctcattctg
gctctggaaagactgaaagaagcatacagtgtcaagtcaaggttgaatcagtctcagcga
gaagagttgggtctcattgagcaggcttatgataatcctcatgaagccctctcacgtatc
aagcgtcatctgctcactcagagagccttcaaggaagtgggcatcgagttcatggacttg
tacagtcatcttattccagtctatgatgtagaaccactggaaaagatcacagatgcatac
cttgatcagtacctgtggtacgaggcagacaagagacgacttttcccaccatgggtgaag
ccaggtgactctgagccacctcccttacttgtgtacaaatggtgtcaaggaattaacaac
ctcacagatgtttgggacacagctgatggtgaatgtaacgtcatgcttgaatccaagtat
gagaaactgtatgagaagattgatcttacattgctcaacaggttgttgcgtttgattgtt
gaccacaacattgctgattacatgacagctaaaaataacgttgacatcaactacaaggac
atgaaccacaccaaccgatatggtatcatctgtggattgcagtttgcctccttcattgtg
cagtattatggcttggttatggatttattagtcttgggtctcaagcgtgcagcagacatg
gctgggcccccacagatgcccaatgacttcctgaacttccaagatgttgccactgaaacc
cagcatcccatcaggttgtactcccgctacattgatagaattcacattttcttccgcttc
tctgcagaagaggcaaaggacctcattcaacgatacttgacagagcatcctgatcccaat
aatgaaaacattgtaggctacaacaacaagaagtgctggccaagggatgccagaatgagg
ctgatgaaacacgatgtgaacctgggacgtgctgtcttctgggacatcaagaaccgtttg
ccaagatctgttacgacggttaactgggagaattcgtttgtgtctgtttactccaaggac
aatccaaatctgcttttcaacatggctggctttgagtgccgtatcttgccaaagtgtcgc
atgacacatgaagagtttaaacacagagatggagtttggaatcttcagaacgaggttaca
aaggaacgtacatcacagtgcttcttgagagtagacgatgagtccatgcagagattccac
aatcgtgtcaggcagatcctcatggcttctggctcaacaactttcaccaaaattgtaaac
aagtggaacactgctctgattggtcttatgacatactaccgagaatcagttgtcaacact
caggaattgcttgatctcttggtgaagtgtgagaacaagattcagacacgtattaagatt
ggtctgaactcaaaaatgccttccagattcccccctgtggtgttctacacacccaaggag
ttgggtggccttggtatgttgtcaatgggtcacgtccttatcccacagtctgatctaagg
tggagcaagcaaacagatgtaggcattactcacttcagatctggtatgagtcatgacgaa
gatcagctgattcccaatttgtacaggtatattcagccatgggaaacagaattcctggac
tctcaaagagtgtgggctgagtatgctctgaagaggcaagaggctactgctcagaacaga
cgtttgaccctagaggatttggaagactcgtgggatcgaggtatcccaagaatcaacact
ctcttccagaaggatcgtcacacactggcctatgacaaaggttggagaattagaactgaa
ttcaagcagtatcaagtcctcaagcagaaccccttctggtggacacatcagcgccacgac
ggaaaactgtggaacttgaacaattaccgtactgacatgatccaagcattgggtggtgta
gaaggtattctggagcacacactcttcaagggcacatacttccctacctgggagggtctc
ttctgggagaaggcatcaggatttgaagagagcatgaagtacaagaagcttaccaatgcc
cagaggtcaggtttgaaccagattcccaaccgtcgcttcaccctctggtggtccccaacc
atcaacagagctaatgtgtatgtaggtttccaggtgcagctcgatctgactggtattttc
atgcacggtaagattcccacactgaagatctctcttatccagattttccgtgcccatttg
tggcagaagatccacgagtctgtggtgatggatttgtgtcaggtattcgatcaagaactt
gatgcattagagattgagactgtgcagaaggagaccattcatcccaggaagtcctataag
atgaattcatcttgtgcagacatcttgctctttgcagcctacaaatggaactactcaaaa
ccatcactgttagcagattccaaggacacaatggatggatcaacaacacagaaatactgg
attgatgttcagcttaggtggggtgattatgattctcatgatgttgagcgatatgccaga
gccaaattccttgactacaccacagataacatgtctctgtacccatccccaacaggtgtg
cttattgcaattgatcttgcttataacttgcacagtgcttatggaaattggttcccagga
gccaaacctcttatacagcaagcaatggcaaagatcatgaaggccaacccagctttgtat
gtgttgcgtgaacgcatccgcaaaggcctccaactttactcatccgagcccactgaacct
tacctctcatcccagaactatggagaattgttctccaatcagattatctggtttgtagat
gatacaaatgtgtacagggtgaccattcacaagacctttgaaggcaacttgaccaccaag
cccattaatggagccattttcatcttcaaccctcgtacaggtcagcttttcctgaagatc
attcacacttcagtatgggctggccagaaacgtctgggtcagctcgccaagtggaagact
gctgaagaagttgctgccttgattaggtccctcccagttgaagaacagcctaagcagatt
attgtcacacgaaagggtatgttggatcctcttgaggtacatttactggatttcccaaac
attgtgatcaagggttctgagctgcagcttcctttccaagcttgtctcaaggtggagaag
tttggagacttgatcttgaaagctaccgagccccagatggtactgtttaacctttacgat
gactggctgaagaacatctcttcctacacagctttctcccgtctcatcctgatccttcga
gctctgcacgtcaacaatgaccgaaccaaggttctcctcaaacctgacaagacaaccatt
acagaacctcaccacatttggccctcactaagtgatgaggattgggtcaaggtagaggta
cagctcaaggacctcattcttgccgattatggtaagaagaacaacgtgaacgtggcatca
ctaacgcagtctgagattcgtgatatcattctgggtatggaaatcagtgctccctctgca
cagagacaacagattgcagagattgaaaaacaaaccaaggaacagtcccagctgacagcc
accacaacaagaactgtcaacaaacatggagatgagatcattacctcaaccaccagtaac
tatgagacggcaacattcagcagcaagacagaatggagagtgagagctatctctgctaca
aatcttcatttgcgtactaactacatctatgtgtcatcagatgacatcaaggaaaccggt
tttacatacatcctgccaaagaatgtgttgaagaaattcatcattatatcagatcttagg
acacagattgcaggttatctctatggtgtaagtcctccagataatccacaggtgaaggag
attcgttgcattgtgatgccaccacaatggggcactcatcagatggtgcatctaccacac
aagctacctgggcacgaattcctgaatgagctggagcctcttgggtggatccacacacag
cccaatgagttgccacagctatcccctcatgacatcaccacacatgctaccatcatggca
gataacacaagttggaccacagaccgcaccattgtcattacctgctccttcaccccaggc
tcttgctccctacaggcatacaaactcacaccatcaggctttgaatggggacggaataat
aaggatatgggcaacaaccccaagggctacctgccatcccactatgagaaggtgcagatg
ttgctctctgaccgcttcttaggccttttcatgaccccacttcagggatcatggaactat
aacttcatgggagtccggcatgaccctaacatgaaatacgaccttcagcttgccagtcca
aaggagttctaccacgaggttcatcgccctgctcacttcctcaatttctcctcacttgac
gaagctgacacagcaggggcagacagagacaatgcactagagtaa
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integrated database retrieval system
